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[187612_s_at]

Description F47D12.7 /REP_DB=WormBase Gene ID /WP=CE01951 /TR=SW:Q09563 /GB=AAK20068.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5.2
(-2.8)
A 		35
(2.3)
A 		3.9
(-3)
A 		38.9
(3)
A 		35
B 3.8
(-3)
A 		5.4
(3)
A 		3.9
(-2.6)
A 		3.8
(-3)
A 		2
C 4.1
(-1.4)
A 		2.5
(-3)
A 		3.2
(-2.3)
A 		8.4
(3)
A 		6
avr 4.4
(-2.7) 		14.3
(1.8) 		3.7
(-3) 		17
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 2.6
(-3)
A 		2.2
(-3)
A 		3.3
(-3)
A 		28.8
(-2)
A 		96.2
(0.4)
P 		169.7
(3)
P 		168
B 2.8
(-3)
A 		2.1
(-3)
A 		8.3
(-2.7)
A 		2.4
(-3)
A 		4.5
(-2.9)
A 		120.8
(3)
P 		119
C 3.7
(-3)
A 		3.3
(-3)
A 		4.5
(-2.9)
A 		59.3
(-0.1)
A 		31.1
(-1.6)
A 		121.1
(3)
P 		118
avr 3
(-3) 		2.5
(-3) 		5.4
(-2.9) 		30.2
(-1.8) 		43.9
(-1.2) 		137.2
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.9
(-2.2)
A 		7.6
(3)
A 		1
(-3)
A 		5.7
(1.3)
A 		7
B 1.2
(1.8)
A 		1.3
(3)
A 		0.9
(-1.8)
A 		0.8
(-3)
A 		1
C 1.3
(2.1)
A 		0.7
(-3)
A 		1.1
(0.4)
A 		1.4
(3)
A 		1
avr 1.5
(-1.6) 		3.2
(3) 		1
(-3) 		2.6
(1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.8
(-3)
A 		0.7
(-3)
A 		7.3
(-2)
A 		29
(1.2)
P 		41.3
(3)
P 		41
B 1
(-2.9)
A 		0.7
(-3)
A 		2
(-2.8)
A 		0.6
(-3)
A 		1.8
(-2.8)
A 		45
(3)
P 		44
C 1.4
(-2.9)
A 		1
(-3)
A 		1.1
(-3)
A 		11.9
(-1.3)
A 		10.1
(-1.6)
A 		40.5
(3)
P 		40
avr 1
(-3) 		0.8
(-3) 		1.3
(-2.9) 		6.6
(-2.2) 		13.6
(-1.1) 		42.3
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187612_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7943
Sequence Type Exemplar sequence
Representative Public ID F47D12.7 NCBI
Target Description F47D12.7 /REP_DB=WormBase Gene ID /WP=CE01951 /TR=SW:Q09563 /GB=AAK20068.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065979 NCBI Caenorhabditis elegans F47D12.7 (F47D12.7) mRNA, complete cds. 11/11 None
GENEFINDER00000002717 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6292238:6295789:-1 11/11 None
SNAP00000002704 ENSEMBL cdna:SNAP chromosome:CEL140:III:6293335:6295789:-1 11/11 None
F47D12.7 ENSEMBL cdna:known chromosome:CEL140:III:6293252:6295789:-1 gene:F47D12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6293333-6295788(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47D12.7
Entrez Gene 175891 Entrez gene
SwissProt Q09563 EMBL-EBI
WormBase CE01951 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK20068 Hypothetical protein F47D12.7 [Caenorhabditis elegans] ref|NP_498380.1| F47D12.7 [Caenorhabditis elegans] sp|Q09563|YR47_CAEEL Hypothetical protein F47D12.7 in chromosome III 0.0
blast CAA83141 Hypothetical protein T16H12.6 [Caenorhabditis elegans] ref|NP_499241.2| KELch-repeat containing protein family member (kel-10) [Caenorhabditis elegans] sp|P34569|KEL10_CAEEL Kelch-repeat containing protein kel-10 0.0
blast CAE67732 Hypothetical protein CBG13307 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006652 EMBL-EBI Kelch repeat 0.02
Pfam IPR006652 EMBL-EBI Kelch repeat 1.7E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 3.7E-9
Pfam IPR006652 EMBL-EBI Kelch repeat 2.5E-12
Pfam IPR006652 EMBL-EBI Kelch repeat 2.3E-9
Pfam IPR006652 EMBL-EBI Kelch repeat 3.5E-8
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.4E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 0.02
Pfam IPR006652 EMBL-EBI Kelch repeat 1.7E-10
Pfam IPR006652 EMBL-EBI Kelch repeat 3.7E-9
Pfam IPR006652 EMBL-EBI Kelch repeat 2.5E-12
Pfam IPR006652 EMBL-EBI Kelch repeat 2.3E-9
Pfam IPR006652 EMBL-EBI Kelch repeat 3.5E-8
Sequence
Target Sequence 
>C. ELEGANS:187612_S_AT
gtacgactaccgtgcggatcagtggactgaggttgcaaatatgacacaaatgagatcgga
tggagctgtggtgacaattgacaataagatagttgctattggaggatttgacgggcggaa
tattcatcaaggaggagaagtttatgatccagttttagatctatggcatcctctctcatc
aaacatgcggacacgtcgtactggctgcactgcggtttcaataatgaatcaagtttgtat
gataattggtggattcaacgggaaccgtcgacttgattctgctgagatttacgatatgcg
agagggtctgtggcatcctgaaccaacattgcaaactgcgagatctaacttttccgcatg
tcaaatggatacctgctatgtttatgtggctggtgggtttgatggtcagacgacgacaaa
ggagtcggaaagattggatttgcgatcaaaaatgtggcaggctcttcctgacatggccga
agccaaatcagcacttcgtatggtaacactttcggatcatccattccttgacgaactgtt
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACGACTACCGTGCGGATCAGTGG 181 423 1173 Antisense
GAGATCGGATGGAGCTGTGGTGACA 63 397 1224 Antisense
TACTGGCTGCACTGCGGTTTCAATA 296 647 1371 Antisense
ACCGTCGACTTGATTCTGCTGAGAT 705 87 1436 Antisense
GTCTGTGGCATCCTGAACCAACATT 307 471 1478 Antisense
GATCTAACTTTTCCGCATGTCAAAT 113 419 1514 Antisense
GGATACCTGCTATGTTTATGTGGCT 269 509 1539 Antisense
GGTGGGTTTGATGGTCAGACGACGA 394 499 1564 Antisense
ATCAGCACTTCGTATGGTAACACTT 213 29 1659 Antisense
GGTAACACTTTCGGATCATCCATTC 59 505 1674 Antisense
CATCCATTCCTTGACGAACTGTTTG 368 209 1690 Antisense
Sequence Source Affymetrix Proprietary Database