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[187608_s_at]

Description Y55F3AM.10 /REP_DB=WormBase Gene ID /WP=CE25481 /TR=Q9N366 /GB=AAF60802.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 61      6grp_total > 12      4grp_total > 25      6grp_highest_sub > De      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 691
1 2 3 4 range
A 471.5
(-3)
P 		774.8
(0.2)
P 		679.4
(-0.8)
P 		1044.8
(3)
P 		573
B 504.2
(-3)
P 		636.1
(-1.6)
P 		626.1
(-1.7)
P 		1059.7
(3)
P 		556
C 368.7
(-3)
P 		718.8
(0.5)
P 		613.3
(-0.5)
P 		960.8
(3)
P 		592
avr 448.1
(-3) 		709.9
(-0.3) 		639.6
(-1) 		1021.8
(3) 		574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 533.3
(3)
P 		455.2
(1.2)
P 		435.8
(0.7)
P 		379.5
(-0.6)
P 		501.1
(2.2)
P 		276.3
(-3)
P 		257
B 459
(0.3)
P 		581.2
(3)
P 		483.9
(0.8)
P 		454.6
(0.2)
P 		453.1
(0.1)
P 		311.9
(-3)
P 		269
C 441.8
(1.2)
P 		523
(3)
P 		376.2
(-0.3)
P 		394.4
(0.1)
P 		323.2
(-1.5)
P 		258.5
(-3)
P 		265
avr 478
(1.9) 		519.8
(3) 		432
(0.8) 		409.5
(0.2) 		425.8
(0.6) 		282.2
(-3) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 171.7
(1.6)
P 		168.2
(0.7)
P 		177.6
(3)
P 		152.9
(-3)
P 		25
B 160.8
(-1.8)
P 		157.1
(-2.1)
P 		145.1
(-3)
P 		225.8
(3)
P 		81
C 122.1
(-3)
P 		206.7
(2.5)
P 		213.8
(3)
P 		162
(-0.4)
P 		92
avr 151.5
(-3) 		177.3
(2.4) 		178.8
(2.7) 		180.2
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 98.3
(-1)
P 		161.9
(3)
P 		94.9
(-1.2)
P 		96.3
(-1.2)
P 		151.2
(2.3)
P 		67.3
(-3)
P 		95
B 159.7
(0.4)
P 		193.5
(3)
P 		117.5
(-2.9)
P 		120.4
(-2.7)
P 		184.1
(2.3)
P 		116.3
(-3)
P 		77
C 163.8
(3)
P 		159.6
(2.7)
P 		95.8
(-1.8)
P 		79.3
(-3)
P 		104.6
(-1.2)
P 		86.5
(-2.5)
P 		85
avr 140.6
(0.7) 		171.7
(3) 		102.7
(-2.1) 		98.7
(-2.4) 		146.6
(1.2) 		90
(-3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187608_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11145
Sequence Type Exemplar sequence
Representative Public ID Y55F3AM.10 NCBI
Target Description Y55F3AM.10 /REP_DB=WormBase Gene ID /WP=CE25481 /TR=Q9N366 /GB=AAF60802.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067626 NCBI Caenorhabditis elegans Y55F3AM.10 (Y55F3AM.10) mRNA, complete cds. 11/11 None
SNAP00000030052 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1027948:1029916:-1 10/11 None
GENEFINDER00000030066 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1027948:1030016:-1 11/11 None
Y55F3AM.10 ENSEMBL cdna:known chromosome:CEL140:IV:1027848:1030024:-1 gene:Y55F3AM.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1027953-1030022(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3AM.10
Entrez Gene 176923 Entrez gene
SwissProt Q9N366 EMBL-EBI
WormBase CE25481 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.15607.1.S1_S_AT similar to abhydrolase domain containing 14A cfa
CHICKEN:GGAAFFX.11282.1.S1_AT similar to Hypothetical protein zgc:85972 gga
HG-U133A:210006_AT abhydrolase domain containing 14A hs
HG-U133_PLUS_2:210006_AT abhydrolase domain containing 14A hs
HG-U133A_2:210006_AT abhydrolase domain containing 14A hs
HU35KSUBA:AA432034_S_AT abhydrolase domain containing 14A hs
U133_X3P:G12803488_3P_AT abhydrolase domain containing 14A hs
HG-U95AV2:41018_AT abhydrolase domain containing 14A hs
MOUSE430_2:1425699_A_AT abhydrolase domain containing 14A mm
MOUSE430A_2:1425699_A_AT abhydrolase domain containing 14A mm
MOE430A:1425699_A_AT abhydrolase domain containing 14A mm
MU11KSUBB:W54155_S_AT abhydrolase domain containing 14A mm
MG-U74AV2:104312_AT abhydrolase domain containing 14A mm
MOE430B:1441945_S_AT abhydrolase domain containing 14A mm
MOUSE430_2:1441945_S_AT abhydrolase domain containing 14A mm
RG-U34C:RC_AI104251_AT similar to Dorz1 (predicted) rn
RAE230A:1372976_AT similar to Dorz1 (predicted) rn
RAT230_2:1372976_AT similar to Dorz1 (predicted) rn
RAE230B:1396113_AT similar to Dorz1 (predicted) rn
RAT230_2:1396113_AT similar to Dorz1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAF60802 Hypothetical protein Y55F3AM.10 [Caenorhabditis elegans] ref|NP_500027.1| Y55F3AM.10 [Caenorhabditis elegans] 1.0E-140
blast CAE63853 Hypothetical protein CBG08413 [Caenorhabditis briggsae] 1.0E-122
blast AAF60802 Hypothetical protein Y55F3AM.10 [Caenorhabditis elegans] ref|NP_500027.1| Y55F3AM.10 [Caenorhabditis elegans] 1.0E-107
blast CAE63853 Hypothetical protein CBG08413 [Caenorhabditis briggsae] 1.0E-98
blast NP_001017276 hypothetical protein LOC550030 [Xenopus tropicalis] 4.0E-28
Sequence
Target Sequence 
>C. ELEGANS:187608_S_AT
tcagtattcgtccgagaagcccgtccacctggagcacactattccaaggctacagtcatc
tttttacatggacagagcttctcatcatctacgtggacagagaataatttgttgagaaca
ttcgcggctctcggctaccgtgccatagccatcgaccttcccggctcgggccaaactcgc
ggagcagctatcccacaagctgagaaaccgaattttttgatggatttcatcgaaacgctg
ggtctgaagcaggtgatgattgtgtgtgcttcgatggcggcacaatatgttttgccactg
atgacttctacgagacatctctcatgtgtggtcctagtcgccccatcaaacacccacgaa
gtcgtcagcccttcttcctatactgtgccaactttagtggtttggggcgaacgcgacacg
tctctgggccccactgcagctgcaaatctcaagaaccttccacaagtgaagcttcagaag
attccagacgccggacacgcgtgctatctacacaatccaaagtgctttgagaacctttgc
gtgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTATTCGTCCGAGAAGCCCGTC 400 603 175 Antisense
GGAGCACACTATTCCAAGGCTACAG 375 519 205 Antisense
TGGACAGAGCTTCTCATCATCTACG 66 549 243 Antisense
TGATTGTGTGTGCTTCGATGGCGGC 596 563 431 Antisense
TTGCCACTGATGACTTCTACGAGAC 604 701 466 Antisense
TTCTTCCTATACTGTGCCAACTTTA 56 689 546 Antisense
TGGTTTGGGGCGAACGCGACACGTC 610 503 572 Antisense
GCTGCAAATCTCAAGAACCTTCCAC 672 295 613 Antisense
AGCTTCAGAAGATTCCAGACGCCGG 202 79 644 Antisense
ACGCGTGCTATCTACACAATCCAAA 430 91 671 Antisense
GTGCTTTGAGAACCTTTGCGTGAAC 558 477 696 Antisense
Sequence Source Affymetrix Proprietary Database