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[187605_at]

Description T23D8.9 /REP_DB=WormBase Gene ID /WP=CE18959 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XVI2 protein_id:CAB03402.1
Cluster 6grp_total > 59      4grp_total > 55      6grp_cgc > 18      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 44.2
(3)
A 		11.9
(-2.4)
A 		20.8
(-0.9)
A 		8.4
(-3)
A 		36
B 87
(3)
A 		13.3
(-2.7)
A 		24.2
(-1.9)
A 		9.7
(-3)
A 		77
C 83.7
(3)
A 		11.3
(-3)
A 		37
(-0.9)
A 		18.2
(-2.4)
A 		72
avr 71.6
(3) 		12.2
(-3) 		27.3
(-1.5) 		12.1
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 115.7
(3)
A 		45.3
(-2.1)
A 		32.1
(-3)
A 		41.4
(-2.3)
A 		99.7
(1.9)
A 		104.2
(2.2)
P 		84
B 75.3
(-0.2)
A 		77.3
(-0.1)
A 		26
(-3)
A 		49.8
(-1.7)
A 		63.5
(-0.9)
A 		132.9
(3)
P 		107
C 65.7
(-0.4)
A 		97
(1.2)
A 		13.2
(-3)
A 		18.5
(-2.7)
A 		39.2
(-1.7)
A 		133.6
(3)
M 		120
avr 85.6
(0.7) 		73.2
(-0) 		23.8
(-3) 		36.6
(-2.2) 		67.5
(-0.4) 		123.6
(3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 16.1
(3)
A 		2.6
(-2.4)
A 		5.4
(-1.3)
A 		1.2
(-3)
A 		15
B 27.7
(3)
A 		3.3
(-2.7)
A 		5.6
(-2.2)
A 		2.1
(-3)
A 		26
C 27.7
(3)
A 		3.3
(-3)
A 		12.9
(-0.6)
A 		3.1
(-3)
A 		25
avr 23.8
(3) 		3.1
(-2.7) 		8
(-1.4) 		2.1
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 21.3
(0.7)
A 		16.1
(-0.6)
A 		7
(-3)
A 		10.5
(-2.1)
A 		30.1
(3)
A 		25.4
(1.8)
P 		23
B 26.2
(-0.2)
A 		25.7
(-0.3)
A 		6.3
(-3)
A 		13.2
(-2)
A 		25.8
(-0.3)
A 		49.6
(3)
P 		43
C 24.4
(0.1)
A 		29.6
(0.8)
A 		3.4
(-3)
A 		3.7
(-3)
A 		12.7
(-1.6)
A 		44.7
(3)
M 		41
avr 24
(0.2) 		23.8
(0.2) 		5.6
(-3) 		9.1
(-2.4) 		22.9
(0) 		39.9
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187605_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1484
Sequence Type Exemplar sequence
Representative Public ID T23D8.9 NCBI
Target Description T23D8.9 /REP_DB=WormBase Gene ID /WP=CE18959 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XVI2 protein_id:CAB03402.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060238 NCBI Caenorhabditis elegans T23D8.9a (T23D8.9) mRNA, complete cds. 11/11 None
GENEFINDER00000036756 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9984859:9992907:-1 11/11 None
SNAP00000036750 ENSEMBL cdna:SNAP chromosome:CEL140:I:9988615:9992907:-1 11/11 None
T23D8.9a ENSEMBL cdna:known chromosome:CEL140:I:9988615:9992907:-1 gene:T23D8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172859 2 1 NM_060238 187605_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9988545-9992838(-) 100.0 100.0
Public Domain and Genome References
Ensembl T23D8.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03402 Hypothetical protein T23D8.9a [Caenorhabditis elegans] ref|NP_492639.1| T23D8.9a [Caenorhabditis elegans] 0.0
blast CAE60246 Hypothetical protein CBG03820 [Caenorhabditis briggsae] 0.0
blast CAB03403 Hypothetical protein T23D8.4 [Caenorhabditis elegans] ref|NP_492638.1| Eukaryotic Initiation Factor family member (eif-3.C) [Caenorhabditis elegans] sp|O02328|IF38_CAEEL Probable eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c) 0.0
blast CAE60247 Hypothetical protein CBG03821 [Caenorhabditis briggsae] 0.0
blast CAC42344 Hypothetical protein T23D8.9b [Caenorhabditis elegans] ref|NP_492640.1| T23D8.9b [Caenorhabditis elegans] 1.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR008905 EMBL-EBI Eukaryotic translation initiation factor 3 subunit 8, N-terminal 1.0E-126
Pfam IPR008904 EMBL-EBI Eukaryotic translation initiation factor 3 subunit 8, C-terminal 3.8E-8
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 3.4E-36
Sequence
Target Sequence 
>C. ELEGANS:187605_AT
aattctccgatcttttatactgttactccgaacaccatttgttccaaaagacggtgttct
gaatgttattgatgaaaatcggaaggaaaatttaataggacacatttgtgccgcctattc
atgggtttttcgtcaaccgaacaatacaagaactcaatccacaaagcagcaacttgttga
acgtaccataagtttattgcttgtgctcatggagcaatgtggagctgaaaaagaggtggc
acagtactcgtattcaattgattgcccattaaatctgctgaacggaaatcaagtgaaacc
aacgtttattcacaatgtgcttgttgtatgtgacaagattttggagcactgcccgacgcg
tgcggatatttggacgattgacaggccgatgttggaaggactgacgaatcatagaaattc
agatatagctaaagccgcgaattctctgctgagtcgcttccctgaaaacgaccttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTCCGATCTTTTATACTGTTA 421 177 1938 Antisense
ACTGTTACTCCGAACACCATTTGTT 251 97 1956 Antisense
TAGGACACATTTGTGCCGCCTATTC 401 653 2033 Antisense
GCCGCCTATTCATGGGTTTTTCGTC 691 261 2047 Antisense
GAGGTGGCACAGTACTCGTATTCAA 152 403 2170 Antisense
ATTGCCCATTAAATCTGCTGAACGG 444 7 2198 Antisense
TGCCCGACGCGTGCGGATATTTGGA 702 583 2287 Antisense
GGACGATTGACAGGCCGATGTTGGA 659 523 2309 Antisense
ATAGCTAAAGCCGCGAATTCTCTGC 298 21 2362 Antisense
GCGAATTCTCTGCTGAGTCGCTTCC 199 289 2374 Antisense
GTCGCTTCCCTGAAAACGACCTTCT 26 341 2390 Antisense
Sequence Source Affymetrix Proprietary Database