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[187604_s_at]

Description F26F4.11 /REP_DB=WormBase Gene ID /WP=CE04448 /TR=SW:Q19826 /GB=AAA91226.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 63      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 77      6grp_total > 64      4grp_total > 32      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 1256.9
(-3)
P 		1673.1
(2.7)
P 		1693.8
(3)
P 		1623.8
(2)
P 		437
B 1282.8
(-3)
P 		1411.5
(-1)
P 		1661.6
(3)
P 		1526.1
(0.9)
P 		379
C 1259.5
(-3)
P 		1520.5
(0.1)
P 		1561.5
(0.6)
P 		1760.5
(3)
P 		501
avr 1266.4
(-3) 		1535
(1.3) 		1639
(3) 		1636.8
(3) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 676
1 2 3 4 5 6 range
A 1211.1
(-2.4)
P 		1237.3
(-2.1)
P 		1723.6
(3)
P 		1322.8
(-1.2)
P 		1160
(-2.9)
P 		1149.8
(-3)
P 		574
B 1047.8
(-3)
P 		1346.5
(0.6)
P 		1405.3
(1.4)
P 		1294.2
(0)
P 		1325.3
(0.4)
P 		1539.6
(3)
P 		492
C 1049.1
(-3)
P 		1440.3
(1.2)
P 		1224.2
(-1.1)
P 		1601.9
(3)
P 		1100.2
(-2.4)
P 		1430.1
(1.1)
P 		553
avr 1102.7
(-3) 		1341.4
(1.1) 		1451
(3) 		1406.3
(2.2) 		1195.2
(-1.4) 		1373.2
(1.7) 		348
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 457.6
(3)
P 		363.2
(0.4)
P 		442.8
(2.6)
P 		237.7
(-3)
P 		220
B 409.1
(3)
P 		348.6
(-1.3)
P 		385
(1.3)
P 		325.2
(-3)
P 		84
C 416.9
(-0.1)
P 		437.2
(0.4)
P 		544.2
(3)
P 		296.8
(-3)
P 		247
avr 427.9
(2) 		383
(0.4) 		457.3
(3) 		286.6
(-3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 223.2
(-3)
P 		440
(3)
P 		375.4
(1.2)
P 		335.5
(0.1)
P 		350
(0.5)
P 		279.9
(-1.4)
P 		217
B 364.6
(-2.4)
P 		448.2
(-0.2)
P 		341.3
(-3)
P 		342.8
(-3)
P 		538.4
(2.1)
P 		574.1
(3)
P 		233
C 388.9
(-0.2)
P 		439.5
(1.6)
P 		311.6
(-3)
P 		322.1
(-2.6)
P 		356
(-1.4)
P 		478.7
(3)
P 		167
avr 325.6
(-3) 		442.6
(2.9) 		342.8
(-2.1) 		333.5
(-2.6) 		414.8
(1.5) 		444.2
(3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187604_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7300
Sequence Type Exemplar sequence
Representative Public ID F26F4.11 NCBI
Target Description F26F4.11 /REP_DB=WormBase Gene ID /WP=CE04448 /TR=SW:Q19826 /GB=AAA91226.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065635 NCBI Caenorhabditis elegans F26F4.11 (F26F4.11) mRNA, complete cds. 11/11 None
F26F4.11 ENSEMBL cdna:known chromosome:CEL140:III:4917192:4917971:-1 gene:F26F4.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014694 6/11 Cross Hyb Matching Probes None
GENEFINDER00000014712 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4917326-4917966(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F4.11
Entrez Gene 175660 Entrez gene
SwissProt Q19826 EMBL-EBI
WormBase CE04448 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262957_S_AT DNA-directed RNA polymerase I, II, and III, putative at
CANINE:1586968_AT similar to polymerase (RNA) II (DNA directed) polypeptide H cfa
CANINE_2:CFA.10643.1.A1_A_AT similar to polymerase (RNA) II (DNA directed) polypeptide H cfa
CANINE_2:CFA.10643.2.A1_S_AT similar to polymerase (RNA) II (DNA directed) polypeptide H cfa
DROSOPHILA_2:1640078_AT dm
DROSGENOME1:153162_AT dm
CHICKEN:GGA.12379.1.S1_A_AT polymerase (RNA) II (DNA directed) polypeptide H gga
HG-U95AV2:1248_AT polymerase (RNA) II (DNA directed) polypeptide H hs
HC-G110:1248_AT polymerase (RNA) II (DNA directed) polypeptide H hs
HG-U133A:209302_AT polymerase (RNA) II (DNA directed) polypeptide H hs
HG-U133_PLUS_2:209302_AT polymerase (RNA) II (DNA directed) polypeptide H hs
HG-U133A_2:209302_AT polymerase (RNA) II (DNA directed) polypeptide H hs
HUGENEFL:U37689_AT polymerase (RNA) II (DNA directed) polypeptide H hs
U133_X3P:G1017822_3P_AT polymerase (RNA) II (DNA directed) polypeptide H hs
HG-U95AV2:35631_AT polymerase (RNA) II (DNA directed) polypeptide H hs
HG-U95D:70942_AT polymerase (RNA) II (DNA directed) polypeptide H hs
MU11KSUBB:MSA.8444.0_S_AT polymerase (RNA) II (DNA directed) polypeptide H mm
MG-U74AV2:92804_AT polymerase (RNA) II (DNA directed) polypeptide H mm
MOE430A:1424473_AT polymerase (RNA) II (DNA directed) polypeptide H mm
MOUSE430A_2:1424473_AT polymerase (RNA) II (DNA directed) polypeptide H mm
MOUSE430_2:1424473_AT polymerase (RNA) II (DNA directed) polypeptide H mm
MU19KSUBA:TC24687_AT Polymerase (RNA) II (DNA directed) polypeptide H (Polr2h), mRNA mm
RG-U34A:RC_AI639518_G_AT polymerase (RNA) II (DNA directed) polypeptide H (predicted) rn
RAE230B:1397081_AT polymerase (RNA) II (DNA directed) polypeptide H (predicted) rn
RAT230_2:1397081_AT polymerase (RNA) II (DNA directed) polypeptide H (predicted) rn
YEAST_2:1778219_AT RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6350 transcription inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA91226 Hypothetical protein F26F4.11 [Caenorhabditis elegans] ref|NP_498036.1| F26F4.11 [Caenorhabditis elegans] sp|Q19826|RPB8_CAEEL Probable DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide (RPB17) (RPB8) 2.0E-81
blast CAE71300 Hypothetical protein CBG18189 [Caenorhabditis briggsae] 3.0E-79
blast AAF51770 CG11246-PA [Drosophila melanogaster] gb|EAL31030.1| GA10862-PA [Drosophila pseudoobscura] ref|NP_649352.1| CG11246-PA [Drosophila melanogaster] gb|AAL28403.1| GM03174p [Drosophila melanogaster] 3.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR005570 EMBL-EBI RNA polymerase Rpb8 7.0E-93
Sequence
Target Sequence 
>C. ELEGANS:187604_S_AT
gaaaagcgtggatccagacggcaaaaaattcgacagagtttctcgatacttctgcgatgc
tgagtctttcaaaatggagcttatcattgatatcaactcgcagatctatccactgaagca
gaacgacaaagttcgtcttgttctggccactacactccgagaagacggacttgccgatga
aggagaatatgatccaaaagcagaatacccaagaatcaaacagtatgaatatgtgatgta
cggaaaagtttaccgcttggaagacgatgatactggaactgacggcggaaagctcgctgc
ttatgcttcgtttggcggtctactgatgcgtttgaagggcgaggctatcaatttgcatgg
tttcgaggtcgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGCGTGGATCCAGACGGCAAA 447 353 48 Antisense
GAGTTTCTCGATACTTCTGCGATGC 264 399 83 Antisense
TACTTCTGCGATGCTGAGTCTTTCA 267 645 94 Antisense
ATCAACTCGCAGATCTATCCACTGA 412 27 139 Antisense
GACAAAGTTCGTCTTGTTCTGGCCA 222 361 172 Antisense
GGCCACTACACTCCGAGAAGACGGA 429 543 192 Antisense
GATGATACTGGAACTGACGGCGGAA 249 411 313 Antisense
AAAGCTCGCTGCTTATGCTTCGTTT 240 125 336 Antisense
TTGGCGGTCTACTGATGCGTTTGAA 219 693 359 Antisense
GAAGGGCGAGGCTATCAATTTGCAT 356 333 381 Antisense
AATTTGCATGGTTTCGAGGTCGACA 60 175 397 Antisense
Sequence Source Affymetrix Proprietary Database