[Home] | [Total List]

[187603_s_at]

Description ZC395.10 /REP_DB=WormBase Gene ID /WP=CE01436 /TR=SW:Q23280 /GB=AAG00038.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 03      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 14      6grp_total > 34      4grp_total > 56      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3275
1 2 3 4 range
A 3814
(-2.9)
P 		4821.6
(-1)
P 		6897.8
(3)
P 		3754.2
(-3)
P 		3144
B 4724.5
(-0.9)
P 		5947
(1.3)
P 		6829.2
(3)
P 		3623
(-3)
P 		3206
C 4005.8
(-3)
P 		4831
(-0.8)
P 		6297.5
(3)
P 		4024.7
(-3)
P 		2292
avr 4181.4
(-2.2) 		5199.9
(-0.1) 		6674.8
(3) 		3800.6
(-3) 		2874

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1684
1 2 3 4 5 6 range
A 4237.3
(2.5)
P 		4375.3
(3)
P 		4251.2
(2.6)
P 		3966.3
(1.5)
P 		2691.2
(-3)
P 		3654.7
(0.4)
P 		1684
B 3600.8
(-0.5)
P 		4242.8
(2.7)
P 		4301.3
(3)
P 		3099
(-3)
P 		3383.8
(-1.6)
P 		3100
(-3)
P 		1202
C 4253.8
(2.8)
P 		4101.8
(2.2)
P 		4318.4
(3)
P 		2707.1
(-3)
P 		3473
(-0.1)
P 		3327.6
(-0.7)
P 		1611
avr 4030.6
(1.6) 		4240
(2.7) 		4290.3
(3) 		3257.5
(-2.6) 		3182.7
(-3) 		3360.8
(-2) 		1108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1645
1 2 3 4 range
A 1388.7
(1)
P 		1046.6
(-0.6)
P 		1803.2
(3)
P 		549.5
(-3)
P 		1254
B 1506.6
(2.4)
P 		1468.8
(2.2)
P 		1582.5
(3)
P 		772.1
(-3)
P 		810
C 1326
(-0.4)
P 		1388.9
(-0.2)
P 		2194.9
(3)
P 		678.6
(-3)
P 		1516
avr 1407.1
(0.7) 		1301.4
(0.2) 		1860.2
(3) 		666.7
(-3) 		1194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1032
1 2 3 4 5 6 range
A 781.1
(-3)
P 		1556.1
(3)
P 		925.8
(-1.9)
P 		1006
(-1.3)
P 		812.1
(-2.8)
P 		889.8
(-2.2)
P 		775
B 1252.9
(1.4)
P 		1412.2
(3)
P 		1044.5
(-0.7)
P 		820.8
(-3)
P 		1374.8
(2.6)
P 		1156
(0.4)
P 		591
C 1576.7
(3)
P 		1251.6
(1.1)
P 		1099.1
(0.2)
P 		544.4
(-3)
P 		1123.8
(0.4)
P 		1114
(0.3)
P 		1032
avr 1203.6
(1) 		1406.6
(3) 		1023.1
(-0.7) 		790.4
(-3) 		1103.6
(0) 		1053.3
(-0.4) 		616
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187603_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7316
Sequence Type Exemplar sequence
Representative Public ID ZC395.10 NCBI
Target Description ZC395.10 /REP_DB=WormBase Gene ID /WP=CE01436 /TR=SW:Q23280 /GB=AAG00038.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065725(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065725 NCBI Caenorhabditis elegans ZC395.10 (ZC395.10) mRNA, complete cds. 11/11 None
SNAP00000016751 ENSEMBL cdna:SNAP chromosome:CEL140:III:5273946:5274713:-1 11/11 None
GENEFINDER00000016760 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5273946:5274713:-1 11/11 None
ZC395.10.2 ENSEMBL cdna:known chromosome:CEL140:III:5273758:5274726:-1 gene:ZC395.10 11/11 None
ZC395.10.1 ENSEMBL cdna:known chromosome:CEL140:III:5273769:5274722:-1 gene:ZC395.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5273944-5274712(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC395.10
Entrez Gene 175727 Entrez gene
SwissProt Q23280 EMBL-EBI
WormBase CE01436 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14873_AT glycine-rich protein at
ATH1-121501:255473_AT glycine-rich protein at
YEAST_2:1776538_AT Co-chaperone that binds to and regulates Hsp90 family chaperones; important for pp60v-src activity in yeast; homologous to the mammalian p23 proteins Sc
Protein Similarities
Method ID Description E-Value
blast AAG00038 Hypothetical protein ZC395.10 [Caenorhabditis elegans] ref|NP_498126.1| ZC395.10 [Caenorhabditis elegans] sp|Q23280|YOCA_CAEEL Hypothetical protein ZC395.10 in chromosome III 8.0E-59
blast CAE73682 Hypothetical protein CBG21192 [Caenorhabditis briggsae] 4.0E-50
Sequence
Target Sequence 
>C. ELEGANS:187603_S_AT
taagcaaccaacagttctctgggcccagcgtgaatcacttgtctatctgaccatcgaggt
tgatgaggcgaaaatcgaggaactgaaaggagagggaaacaagcttcacttccaaggaag
cagcaaaactgacaagtacgaagcaactctcgaattcttcgacgaaatcgatcctgcatc
cgtaaagcacactggatcttcaacccgcgtcgttgagatcacagttcagaagaagacccc
agcctggtggccaagacttcttcaaaacaagggaaaggtccattggttgaaggttgactt
tggaaaatggaaggatgaagacgaggatgatgaggctgaggatgccggagccggaattgg
cggtggaatggcgaacggattcgatttgaaccagtacatgtcccagatgggaggagctgg
cggagcagacttcggaggtcttgaggatgatgaggaagatgacgatatgccagatctcga
ag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCAACCAACAGTTCTCTGGGCC 448 637 18 Antisense
TTCTCTGGGCCCAGCGTGAATCACT 61 691 32 Antisense
GAATCACTTGTCTATCTGACCATCG 557 327 49 Antisense
AGTACGAAGCAACTCTCGAATTCTT 451 61 152 Antisense
GAAATCGATCCTGCATCCGTAAAGC 2 361 181 Antisense
TAAAGCACACTGGATCTTCAACCCG 463 641 200 Antisense
CAACCCGCGTCGTTGAGATCACAGT 96 187 218 Antisense
TTCAGAAGAAGACCCCAGCCTGGTG 612 681 242 Antisense
CCTGGTGGCCAAGACTTCTTCAAAA 502 263 260 Antisense
TGAGGCTGAGGATGCCGGAGCCGGA 354 567 348 Antisense
GATGACGATATGCCAGATCTCGAAG 153 411 475 Antisense
Sequence Source Affymetrix Proprietary Database