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[187602_at]

Description C45G9.12 /REP_DB=WormBase Gene ID /WP=CE01853 /TR=SW:Q09283 /GB=AAA62555.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 71      6grp_total > 71      4grp_total > 49      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 836
1 2 3 4 range
A 90.7
(-2.8)
A 		731.6
(3)
P 		622.6
(2)
P 		63
(-3)
A 		669
B 166.8
(-2.4)
A 		793.9
(2.2)
P 		899
(3)
P 		92.1
(-3)
A 		807
C 127.5
(-2.8)
A 		776.4
(2.7)
P 		805.6
(3)
P 		107.4
(-3)
A 		698
avr 128.3
(-2.6) 		767.3
(2.9) 		775.7
(3) 		87.5
(-3) 		688

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 244.1
(-1.1)
A 		354.9
(1.1)
P 		347.9
(1)
P 		452
(3)
P 		250.9
(-1)
P 		147
(-3)
A 		305
B 174.8
(-2.2)
P 		332.7
(2.4)
P 		317
(1.9)
P 		355
(3)
P 		336
(2.5)
P 		145.7
(-3)
P 		209
C 210.6
(-1.5)
P 		252.6
(-0.4)
P 		380.2
(2.7)
P 		393.4
(3)
P 		321.3
(1.2)
P 		148.1
(-3)
M 		245
avr 209.8
(-1.5) 		313.4
(0.9) 		348.4
(1.8) 		400.1
(3) 		302.7
(0.7) 		146.9
(-3) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 33
(-2.1)
A 		158.8
(2.8)
P 		162.7
(3)
P 		9.2
(-3)
A 		154
B 53.2
(-1.9)
A 		196.1
(2.6)
P 		208.3
(3)
P 		19.6
(-3)
A 		189
C 42.2
(-2.4)
A 		223.2
(1.7)
P 		280.8
(3)
P 		18.1
(-3)
A 		263
avr 42.8
(-2.2) 		192.7
(2.3) 		217.3
(3) 		15.6
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 45
(-2.4)
A 		126.2
(3)
P 		75.8
(-0.3)
P 		114.6
(2.2)
P 		75.7
(-0.4)
P 		35.8
(-3)
A 		90
B 60.8
(-2.5)
P 		110.8
(1.1)
P 		77
(-1.3)
P 		94
(-0.1)
P 		136.5
(3)
P 		54.3
(-3)
P 		82
C 78.1
(0.1)
P 		77.1
(0)
P 		96.8
(2.2)
P 		79.1
(0.3)
P 		104
(3)
P 		49.6
(-3)
M 		54
avr 61.3
(-1.5) 		104.7
(2.9) 		83.2
(0.7) 		95.9
(2) 		105.4
(3) 		46.6
(-3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7462
Sequence Type Exemplar sequence
Representative Public ID C45G9.12 NCBI
Target Description C45G9.12 /REP_DB=WormBase Gene ID /WP=CE01853 /TR=SW:Q09283 /GB=AAA62555.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065678 NCBI Caenorhabditis elegans C45G9.12 (C45G9.12) mRNA, complete cds. 11/11 None
GENEFINDER00000017863 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5070390:5071556:-1 11/11 None
C45G9.12 ENSEMBL cdna:known chromosome:CEL140:III:5070390:5071556:-1 gene:C45G9.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5070388-5071555(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45G9.12
Entrez Gene 183482 Entrez gene
SwissProt Q09283 EMBL-EBI
WormBase CE01853 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498079 C45G9.12 [Caenorhabditis elegans] gb|AAA62555.1| Hypothetical protein C45G9.12 [Caenorhabditis elegans] sp|Q09283|YQIC_CAEEL Hypothetical protein C45G9.12 in chromosome III 1.0E-39
blast CAE75106 Hypothetical protein CBG23029 [Caenorhabditis briggsae] 3.0E-25
Sequence
Target Sequence 
>C. ELEGANS:187602_AT
gaatgcgttttcaatcatactgcttcttctctccgttcttctaataaatgctcaatttca
gccgagaacatcaaatcgcggaacaatttttcgcccaatgactcgtaattctggtatagt
tggaagaagaggtggcccagttgctccggctccgttcagaaataatgtacaaaaacctgg
aactagaccacccggtttcaagccaccaagtggagttgccaaaaagcttaattctgcagt
ggatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCGTTTTCAATCATACTGCTT 378 331 15 Antisense
TTTTCAATCATACTGCTTCTTCTCT 76 677 22 Antisense
CTTCTCTCCGTTCTTCTAATAAATG 166 221 40 Antisense
TCAAATCGCGGAACAATTTTTCGCC 678 627 85 Antisense
AATTTTTCGCCCAATGACTCGTAAT 540 173 99 Antisense
CGCCCAATGACTCGTAATTCTGGTA 240 257 106 Antisense
GAAGAAGAGGTGGCCCAGTTGCTCC 174 341 137 Antisense
TTGCTCCGGCTCCGTTCAGAAATAA 25 703 155 Antisense
CCCGGTTTCAAGCCACCAAGTGGAG 412 255 205 Antisense
AGCCACCAAGTGGAGTTGCCAAAAA 535 83 215 Antisense
AAAGCTTAATTCTGCAGTGGATTTC 452 123 237 Antisense
Sequence Source Affymetrix Proprietary Database