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[187601_at]

Description C34E10.2 /REP_DB=WormBase Gene ID /WP=CE01182 /TR=SW:P46577 /GB=AAA19064.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 85      6grp_total > 77      4grp_total > 61      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 345
1 2 3 4 range
A 812.3
(3)
P 		737.9
(-1)
P 		752.2
(-0.2)
P 		701.3
(-3)
P 		111
B 788
(0.7)
P 		841.4
(2.6)
P 		853.9
(3)
P 		682.3
(-3)
P 		172
C 969.5
(3)
P 		876.3
(1.4)
P 		930.2
(2.3)
P 		624.4
(-3)
P 		345
avr 856.6
(3) 		818.5
(1.8) 		845.4
(2.6) 		669.3
(-3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 394
1 2 3 4 5 6 range
A 714.5
(-2.2)
P 		700.2
(-2.5)
P 		672.4
(-3)
P 		720.9
(-2.1)
P 		783.5
(-0.9)
P 		997.1
(3)
P 		325
B 655.2
(-3)
P 		675.2
(-2.4)
P 		756.5
(-0.2)
P 		683.7
(-2.2)
P 		740.4
(-0.6)
P 		872.6
(3)
P 		217
C 785.4
(-0.4)
P 		616.7
(-3)
P 		750.6
(-1)
P 		873.9
(0.9)
P 		747.8
(-1)
P 		1010.4
(3)
P 		394
avr 718.4
(-1.9) 		664
(-3) 		726.5
(-1.7) 		759.5
(-1.1) 		757.2
(-1.1) 		960
(3) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 295.8
(3)
P 		160.2
(-1.2)
P 		196.6
(-0.1)
P 		102.7
(-3)
P 		193
B 251.3
(3)
P 		207.8
(0.5)
P 		197.9
(-0)
P 		145.4
(-3)
P 		106
C 320.9
(2.9)
P 		251.9
(1)
P 		324.2
(3)
P 		105.3
(-3)
P 		219
avr 289.3
(3) 		206.6
(0.1) 		239.6
(1.3) 		117.8
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 131.7
(-3)
P 		249
(3)
P 		146.4
(-2.2)
P 		182.8
(-0.4)
P 		236.4
(2.4)
P 		242.8
(2.7)
P 		117
B 228
(-1)
P 		224.7
(-1.2)
P 		183.7
(-2.9)
P 		181.1
(-3)
P 		300.8
(2)
P 		325.4
(3)
P 		144
C 291.1
(1.3)
P 		188.2
(-2.5)
P 		191
(-2.4)
P 		175.7
(-3)
P 		242
(-0.6)
P 		338.2
(3)
P 		163
avr 216.9
(-1) 		220.6
(-0.8) 		173.7
(-3) 		179.9
(-2.7) 		259.7
(1) 		302.1
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6501
Sequence Type Exemplar sequence
Representative Public ID C34E10.2 NCBI
Target Description C34E10.2 /REP_DB=WormBase Gene ID /WP=CE01182 /TR=SW:P46577 /GB=AAA19064.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065717(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065717 NCBI Caenorhabditis elegans Gro-1 OPeron gene family member (gop-2) (gop-2) mRNA, complete cds. 11/11 None
SNAP00000034359 ENSEMBL cdna:SNAP chromosome:CEL140:III:5258990:5260351:1 11/11 None
GENEFINDER00000034368 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5258990:5260351:1 11/11 None
C34E10.2 ENSEMBL cdna:known chromosome:CEL140:III:5258980:5260467:1 gene:C34E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5258988-5260350(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gop-2
Ensembl C34E10.2
Entrez Gene 175722 Entrez gene
SwissProt P46577 EMBL-EBI
WormBase CE01182 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15241_S_AT ATP-binding family protein at
ATH1-121501:254375_AT ATP-binding family protein at
CANINE:1585517_AT similar to XPA binding protein 1 cfa
CANINE:1585516_AT similar to XPA binding protein 1 cfa
CANINE_2:CFA.1845.1.A1_AT similar to XPA binding protein 1 cfa
CANINE_2:CFAAFFX.8698.1.S1_AT similar to XPA binding protein 1 cfa
DROSOPHILA_2:1639850_AT dm
DROSGENOME1:154641_AT dm
CHICKEN:GGA.13464.1.S1_AT XPA binding protein 1, GTPase gga
HG-U133_PLUS_2:209313_AT XPA binding protein 1, GTPase hs
HG-U133A:209313_AT XPA binding protein 1, GTPase hs
HG-U133A_2:209313_AT XPA binding protein 1, GTPase hs
HU35KSUBA:AA166651_AT XPA binding protein 1, GTPase hs
HU35KSUBA:RC_AA453810_AT XPA binding protein 1, GTPase hs
U133_X3P:G11094140_3P_AT XPA binding protein 1, GTPase hs
HG-U95AV2:41756_AT XPA binding protein 1, GTPase hs
MOE430A:1417390_AT XPA binding protein 1 mm
MOUSE430A_2:1417390_AT XPA binding protein 1 mm
MOUSE430_2:1417390_AT XPA binding protein 1 mm
MG-U74AV2:103406_AT XPA binding protein 1 mm
MG-U74BV2:115649_AT XPA binding protein 1 mm
MOE430B:1442114_AT XPA binding protein 1 mm
MOUSE430_2:1442114_AT XPA binding protein 1 mm
MOUSE430_2:1444781_AT XPA binding protein 1 (Xab1), mRNA mm
MOE430B:1444781_AT XPA binding protein 1 (Xab1), mRNA mm
MU19KSUBB:TC28021_S_AT XPA binding protein 1 (Xab1), mRNA mm
MU19KSUBB:TC32495_AT XPA binding protein 1 (Xab1), mRNA mm
MU19KSUBB:TC32495_G_AT XPA binding protein 1 (Xab1), mRNA mm
RAE230A:1373980_AT similar to XPA binding protein 1 rn
RAT230_2:1373980_AT similar to XPA binding protein 1 rn
YEAST_2:1774237_AT Cytoplasmic protein required for cell viability, identified by association with pre-ribosomal particles Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA19064 Gro-1 operon gene protein 2 [Caenorhabditis elegans] ref|NP_498118.1| Gro-1 OPeron gene family member (gop-2) [Caenorhabditis elegans] gb|AAL14109.1| GOP-2 [Caenorhabditis elegans] sp|P46577|GOP2_CAEEL Gro-1 operon protein 1.0E-170
blast CAE73673 Hypothetical protein CBG21182 [Caenorhabditis briggsae] 1.0E-154
blast NP_598517 XPA binding protein 1 [Mus musculus] dbj|BAE27360.1| unnamed protein product [Mus musculus] dbj|BAE26784.1| unnamed protein product [Mus musculus] dbj|BAC36923.1| unnamed protein product [Mus musculus] gb|AAH96466.1| XPA binding protein 1 [Mus musculus] sp|Q8VCE2|XAB1_MOUSE XPA-binding protein 1 gb|AAH20174.1| XPA binding protein 1 [Mus musculus] 8.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR004130 EMBL-EBI Conserved hypothetical ATP binding protein 1.1E-117
Sequence
Target Sequence 
>C. ELEGANS:187601_AT
caagtagccatcccacggtggtaatgtacattgtggattccgctcgtgccacaaatccaa
ctacattcatgtccaatatgctctacgcatgttccattctctaccgtaccaaacttccat
tcattgtcgttttcaacaaagctgatattgtcaaaccaacatttgcactcaaatggatgc
aagatttcgaaagatttgatgaagctttagaggatgccagaagcagttatatgaatgatt
tgagtcgttcattgagtctcgttcttgatgaattctattgcggactgaaaacagtttgcg
tcagttctgcaactggagaaggattcgaagatgtaatgacagcaatcgatgaaagtgttg
aagcatacaaaaaagaatatgttccaatgtatgaaaaagtgttggctgagaaaaaactat
tggatgaggaggagagaaagaaaagagatgaagagactctgaaaggaaaagctgttcacg
acctgaacaaagtcgccaatcccgacgaatttctggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTAGCCATCCCACGGTGGTAAT 325 159 476 Antisense
TGTACATTGTGGATTCCGCTCGTGC 37 561 500 Antisense
GTGCCACAAATCCAACTACATTCAT 69 479 521 Antisense
CATTCATGTCCAATATGCTCTACGC 550 215 539 Antisense
ATATGCTCTACGCATGTTCCATTCT 227 21 551 Antisense
TACCGTACCAAACTTCCATTCATTG 58 649 577 Antisense
ACTTCCATTCATTGTCGTTTTCAAC 139 105 588 Antisense
GAGTCGTTCATTGAGTCTCGTTCTT 682 399 717 Antisense
AACAGTTTGCGTCAGTTCTGCAACT 361 137 765 Antisense
GACCTGAACAAAGTCGCCAATCCCG 470 379 955 Antisense
GCCAATCCCGACGAATTTCTGGAGT 53 277 970 Antisense
Sequence Source Affymetrix Proprietary Database