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[187600_at]

Description F23B2.1 /REP_DB=WormBase Gene ID /WP=CE09581 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O02247 protein_id:CAB05181.1
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_highest_nonorm > 24      6grp_total > 31      4grp_total > 62      6grp_highest_sub > 02      6grp_cgc > 71      6grp_high1_sub > 02_03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1554
1 2 3 4 range
A 3736.3
(3)
P 		3313.7
(0.9)
P 		3345.8
(1.1)
P 		2506.4
(-3)
P 		1230
B 3677.5
(3)
P 		2587.5
(-1.4)
P 		2762.7
(-0.7)
P 		2182.7
(-3)
P 		1495
C 3555.8
(3)
P 		2640.7
(-1)
P 		3269.2
(1.7)
P 		2188.3
(-3)
P 		1368
avr 3656.5
(3) 		2847.3
(-0.6) 		3125.9
(0.7) 		2292.5
(-3) 		1364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1500
1 2 3 4 5 6 range
A 3147.4
(0.7)
P 		3650.9
(3)
P 		3030.4
(0.1)
P 		3018.3
(0.1)
P 		2369.2
(-2.9)
P 		2355
(-3)
P 		1296
B 3085.9
(0.5)
P 		3218.4
(1)
P 		3680.8
(3)
P 		2519.9
(-2)
P 		2399.8
(-2.5)
P 		2276.2
(-3)
P 		1405
C 2970.9
(0.1)
P 		3554.5
(2.5)
P 		3689
(3)
P 		3061.4
(0.5)
P 		2371
(-2.3)
P 		2188.6
(-3)
P 		1500
avr 3068.1
(1) 		3474.6
(3) 		3466.7
(3) 		2866.5
(-0) 		2380
(-2.5) 		2273.3
(-3) 		1201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 994
1 2 3 4 range
A 1360.4
(3)
P 		719.3
(-0.9)
P 		874.7
(0.1)
P 		366.9
(-3)
P 		994
B 1172.7
(3)
P 		639
(-1.5)
P 		640.2
(-1.5)
P 		465.1
(-3)
P 		708
C 1177.1
(3)
P 		759.2
(-0.1)
P 		1139.4
(2.7)
P 		369
(-3)
P 		808
avr 1236.7
(3) 		705.8
(-0.8) 		884.8
(0.5) 		400.3
(-3) 		836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 725
1 2 3 4 5 6 range
A 580.2
(-2.9)
P 		1298.4
(3)
P 		660
(-2.3)
P 		765.5
(-1.4)
P 		714.9
(-1.8)
P 		573.4
(-3)
P 		725
B 1073.7
(3)
P 		1071.3
(3)
P 		893.8
(0.3)
P 		667.4
(-3)
P 		975
(1.5)
P 		848.8
(-0.3)
P 		406
C 1101.2
(3)
P 		1084.6
(2.8)
P 		938.9
(1)
P 		615.7
(-3)
P 		767.2
(-1.1)
P 		732.6
(-1.6)
P 		486
avr 918.4
(0) 		1151.4
(3) 		830.9
(-1.1) 		682.9
(-3) 		819
(-1.3) 		718.3
(-2.5) 		469
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187600_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9108
Sequence Type Exemplar sequence
Representative Public ID F23B2.1 NCBI
Target Description F23B2.1 /REP_DB=WormBase Gene ID /WP=CE09581 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O02247 protein_id:CAB05181.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171410(11), NM_171411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171410 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-60) (tag-60) mRNA, complete cds. 11/11 A 
NM_171411 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-60) (tag-60) mRNA, complete cds. 11/11 A 
SNAP00000024638 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9126981:9129746:1 10/11 None
GENEFINDER00000024653 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9127056:9129913:1 11/11 None
C01F6.6a ENSEMBL cdna:known chromosome:CEL140:IV:9119079:9130362:1 gene:C01F6.6 11/11 A 
C01F6.6b ENSEMBL cdna:known chromosome:CEL140:IV:9121366:9129913:1 gene:C01F6.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9128528-9129919(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01F6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 0.0
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 0.0
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-157
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-156
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-153
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.5E-5
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Sequence
Target Sequence 
>C. ELEGANS:187600_AT
gagtcaatcttcctggtgtaactatgtctagtcacactgaagtattgccaccaacagatg
atatttcatcagtttcttcattgagttctcatcgcgaaagtgctgttgatgttccagttt
ctcatcagtacgttccatcgtacgcaacggagtctcatcagaaacatgagcaacactctc
aaactcatcatcatcatcatcaacaccaacaaccatctccattgagcaatggttccagcc
atggatatgcagcaagctcgactagtggatacgatgacgatgatatctatcatttgtcag
caagagaagctcgtgaacgtcttcgaatgaagaaccgaaagcatcacttgcacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCAATCTTCCTGGTGTAACTAT 634 391 32 Antisense
GTCACACTGAAGTATTGCCACCAAC 603 463 62 Antisense
ATCAGTTTCTTCATTGAGTTCTCAT 591 29 99 Antisense
GAGTTCTCATCGCGAAAGTGCTGTT 141 399 114 Antisense
GTGCTGTTGATGTTCCAGTTTCTCA 523 479 131 Antisense
TTTCTCATCAGTACGTTCCATCGTA 148 671 149 Antisense
CCATCGTACGCAACGGAGTCTCATC 466 269 166 Antisense
GAGCAACACTCTCAAACTCATCATC 103 391 199 Antisense
ACCAACAACCATCTCCATTGAGCAA 444 85 236 Antisense
TGCAGCAAGCTCGACTAGTGGATAC 82 577 279 Antisense
GAACCGAAAGCATCACTTGCACGAG 84 347 363 Antisense
Sequence Source Affymetrix Proprietary Database