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[187599_at]

Description T20B12.5 /REP_DB=WormBase Gene ID /WP=CE01411 /TR=SW:P41845 /GB=AAA19058.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 47.3
(-0.6)
A 		41.8
(-1.1)
A 		20.1
(-3)
A 		89.1
(3)
A 		69
B 47.1
(1.3)
A 		5.3
(-3)
A 		63.6
(3)
A 		46
(1.2)
A 		58
C 49.6
(-0)
A 		77.4
(3)
A 		22.7
(-3)
A 		73.1
(2.5)
A 		55
avr 48
(-0.8) 		41.5
(-1.9) 		35.5
(-3) 		69.4
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 66.9
(1.7)
A 		26.3
(-3)
A 		44.8
(-0.9)
A 		47.6
(-0.6)
A 		78.5
(3)
A 		51.1
(-0.1)
A 		52
B 55.1
(3)
A 		31.7
(-0.2)
A 		42.5
(1.3)
A 		11
(-3)
A 		49
(2.2)
A 		20.3
(-1.7)
A 		44
C 32
(-3)
A 		38.2
(-1.7)
A 		40.6
(-1.2)
A 		60.8
(3)
A 		48.5
(0.4)
A 		43.3
(-0.6)
A 		29
avr 51.3
(1.3) 		32.1
(-3) 		42.6
(-0.6) 		39.8
(-1.3) 		58.7
(3) 		38.2
(-1.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 17.2
(3)
A 		9.1
(-1.1)
A 		5.2
(-3)
A 		13
(0.9)
A 		12
B 15
(3)
A 		1.3
(-3)
A 		14.7
(2.9)
A 		9.8
(0.7)
A 		14
C 16.4
(0.6)
A 		22.2
(3)
A 		7.9
(-3)
A 		12.3
(-1.2)
A 		14
avr 16.2
(3) 		10.9
(-1.6) 		9.3
(-3) 		11.7
(-0.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 12.3
(-1.8)
A 		9.4
(-3)
A 		9.7
(-2.9)
A 		12.1
(-1.9)
A 		23.7
(3)
A 		12.4
(-1.7)
A 		14
B 19.2
(2.8)
A 		10.6
(-0.3)
A 		10.3
(-0.4)
A 		2.9
(-3)
A 		19.9
(3)
A 		7.6
(-1.3)
A 		17
C 11.9
(-1.2)
A 		11.7
(-1.4)
A 		10.3
(-3)
A 		12.2
(-0.9)
A 		15.7
(3)
A 		14.5
(1.7)
A 		5
avr 14.5
(0) 		10.6
(-2.2) 		10.1
(-2.4) 		9.1
(-3) 		19.8
(3) 		11.5
(-1.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6553
Sequence Type Exemplar sequence
Representative Public ID T20B12.5 NCBI
Target Description T20B12.5 /REP_DB=WormBase Gene ID /WP=CE01411 /TR=SW:P41845 /GB=AAA19058.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066228 NCBI Caenorhabditis elegans T20B12.5 (T20B12.5) mRNA, complete cds. 11/11 None
T20B12.5 ENSEMBL cdna:known chromosome:CEL140:III:7366637:7367032:-1 gene:T20B12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7366634-7367030(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20B12.5
Entrez Gene 188632 Entrez gene
SwissProt P41845 EMBL-EBI
WormBase CE01411 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19058 Hypothetical protein T20B12.5 [Caenorhabditis elegans] ref|NP_498629.1| T20B12.5 [Caenorhabditis elegans] sp|P41845|YO95_CAEEL Hypothetical protein T20B12.5 in chromosome III 1.0E-72
Sequence
Target Sequence 
>C. ELEGANS:187599_AT
gctcatgctccaaattctctatgtcctccgaatttttcgaacccagatggttattcaaac
atctccagtccgttcgatctatcaaaaccttcgtatccaccacgttttccaaatccgcga
aattctcctcctccacatggcccacgaagtcctccacttctactgttgtttaggtttctc
gccttttttttacaattcaaggtttttgcaattcaaggtttcaatacggtgtccgctctt
ccacgctcaaaatattttcaattctaaattggaaaaatatgaatgtacctttaaatacta
cagtaacccgctcctcgttaacgtaattatactctttggtttgcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCATGCTCCAAATTCTCTATGTC 421 301 30 Antisense
TCTCTATGTCCTCCGAATTTTTCGA 399 611 45 Antisense
GTTATTCAAACATCTCCAGTCCGTT 5 449 79 Antisense
TCTCCAGTCCGTTCGATCTATCAAA 70 611 91 Antisense
TCTATCAAAACCTTCGTATCCACCA 293 615 107 Antisense
TTTCCAAATCCGCGAAATTCTCCTC 591 669 135 Antisense
CCTCCACTTCTACTGTTGTTTAGGT 465 267 180 Antisense
TACTGTTGTTTAGGTTTCTCGCCTT 286 647 190 Antisense
TCTCGCCTTTTTTTTACAATTCAAG 465 611 206 Antisense
CAAGGTTTCAATACGGTGTCCGCTC 514 183 243 Antisense
GTAATTATACTCTTTGGTTTGCGGA 186 461 352 Antisense
Sequence Source Affymetrix Proprietary Database