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[187598_at]

Description C35C5.7 /REP_DB=WormBase Gene ID /WP=CE08585 /CHR=X /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q93331 protein_id:CAB01687.1
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 53      6grp_total > 72      4grp_total > 39      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 621
1 2 3 4 range
A 738.9
(3)
P 		287.5
(-2.1)
P 		212.2
(-3)
P 		305.5
(-1.9)
P 		527
B 715.7
(3)
P 		240.3
(-3)
P 		270.1
(-2.6)
P 		310.1
(-2.1)
P 		475
C 833
(3)
P 		255.9
(-3)
P 		292.3
(-2.6)
P 		407.8
(-1.4)
P 		577
avr 762.5
(3) 		261.2
(-3) 		258.2
(-3) 		341.1
(-2) 		504

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1507
1 2 3 4 5 6 range
A 216.7
(-3)
P 		427.8
(-2.1)
P 		1533.7
(2.5)
P 		1657.1
(3)
P 		1056.4
(0.5)
P 		236
(-2.9)
P 		1440
B 178.5
(-3)
P 		444.6
(-1.8)
P 		1440.1
(2.9)
P 		1280.7
(2.1)
P 		1463.6
(3)
P 		349.4
(-2.2)
P 		1285
C 158.6
(-3)
P 		458.3
(-1.8)
P 		1135.4
(0.9)
P 		1665.6
(3)
P 		1044.5
(0.5)
P 		347.8
(-2.2)
P 		1507
avr 184.6
(-3) 		443.6
(-1.8) 		1369.7
(2.3) 		1534.5
(3) 		1188.2
(1.5) 		311.1
(-2.4) 		1350
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 269
(3)
P 		62.4
(-2.5)
P 		55.5
(-2.7)
P 		44.7
(-3)
P 		224
B 228.2
(3)
P 		59.3
(-3)
P 		62.6
(-2.9)
P 		66.1
(-2.8)
P 		169
C 275.7
(3)
P 		73.6
(-2.9)
P 		101.9
(-2)
P 		68.8
(-3)
P 		207
avr 257.6
(3) 		65.1
(-2.8) 		73.3
(-2.6) 		59.9
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 555
1 2 3 4 5 6 range
A 40
(-3)
P 		152.2
(-1.2)
P 		334
(1.6)
P 		420.3
(3)
P 		318.8
(1.4)
P 		57.4
(-2.7)
P 		380
B 62.1
(-3)
P 		148
(-2)
P 		349.7
(0.2)
P 		339.2
(0.1)
P 		594.7
(3)
P 		130.3
(-2.2)
P 		533
C 58.8
(-3)
P 		139.9
(-1.3)
P 		289
(1.9)
P 		334.9
(2.9)
P 		338
(3)
P 		116.4
(-1.8)
P 		279
avr 53.6
(-3) 		146.7
(-1.5) 		324.2
(1.5) 		364.8
(2.1) 		417.2
(3) 		101.4
(-2.2) 		364
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16586
Sequence Type Exemplar sequence
Representative Public ID C35C5.7 NCBI
Target Description C35C5.7 /REP_DB=WormBase Gene ID /WP=CE08585 /CHR=X /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q93331 protein_id:CAB01687.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077524 NCBI Caenorhabditis elegans C35C5.8a (C35C5.8) mRNA, complete cds. 11/11 None
GENEFINDER00000005115 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11534158:11536928:1 11/11 None
C35C5.8a ENSEMBL cdna:known chromosome:CEL140:X:11533975:11536478:1 gene:C35C5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005102 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181342 2 1 NM_077524 187598_at (11)
NM_077525 187589_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11534157-11535313(+) 100.0 100.0
Public Domain and Genome References
Ensembl C35C5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42263 Hypothetical protein C35C5.8a [Caenorhabditis elegans] ref|NP_509925.1| C35C5.8a [Caenorhabditis elegans] 1.0E-176
blast CAE70622 Hypothetical protein CBG17306 [Caenorhabditis briggsae] 1.0E-159
blast T19750 hypothetical protein C35C5.7 - Caenorhabditis elegans 1.0E-117
blast T19750 hypothetical protein C35C5.7 - Caenorhabditis elegans 1.0E-116
blast CAC42263 Hypothetical protein C35C5.8a [Caenorhabditis elegans] ref|NP_509925.1| C35C5.8a [Caenorhabditis elegans] 1.0E-116
blast CAE70622 Hypothetical protein CBG17306 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509925.1 1 7-29
C35C5.8a 1 7-29
GENEFINDER00000005115 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:187598_AT
gctacggaaaacgctacagctcgtgagcgcatcaatgtttatgaagactatttcatggag
tgtaacactcttggtcatgaaagagcggagagagtatttcaaaatgtatacaacattaaa
cttacaaaggatatgaagcttttgctgaccttaggattcaactcatttgctgcacgattt
gtctcaatggaagcgggagagttcaaagaaggattgagacagctttgtgagaagtatgaa
atgcagcttcagtgtcaatatggatttggtgaatccagaaccgcaatttactggcgactg
gatgatttgaaaaacacagatggaaacctgcgtatcttacttgatcgtcaatgcccagaa
ccggaaattgataatactgtttaccattgcttctcagctggtgtggaagaatatacgaaa
ccttgctttgaggagatgctagcatacaactatacacggtactcagctggcagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTACGGAAAACGCTACAGCTCGTG 705 285 184 Antisense
ACAGCTCGTGAGCGCATCAATGTTT 557 107 199 Antisense
GAAGCTTTTGCTGACCTTAGGATTC 503 341 318 Antisense
GGATTCAACTCATTTGCTGCACGAT 577 509 337 Antisense
TGCTGCACGATTTGTCTCAATGGAA 132 581 351 Antisense
AATGCAGCTTCAGTGTCAATATGGA 181 163 423 Antisense
GGTGAATCCAGAACCGCAATTTACT 596 499 451 Antisense
AACCTGCGTATCTTACTTGATCGTC 449 147 508 Antisense
TGATCGTCAATGCCCAGAACCGGAA 49 567 525 Antisense
ACTGTTTACCATTGCTTCTCAGCTG 566 97 559 Antisense
TATACACGGTACTCAGCTGGCAGAC 50 657 634 Antisense
Sequence Source Affymetrix Proprietary Database