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[187597_at]

Description T20B12.6 /REP_DB=WormBase Gene ID /WP=CE25117 /TR=SW:P41846 /GB=AAA19059.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 73      6grp_total > 0      4grp_total > 23      6grp_highest_sub > 02      6grp_total_sub > Hat      6grp_cgc > 53      6grp_high1_sub > 02      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 608
1 2 3 4 range
A 1226.4
(3)
P 		708.8
(-3)
P 		769.9
(-2.3)
P 		907
(-0.7)
P 		518
B 1085.5
(0.6)
P 		754.8
(-2.9)
P 		740.7
(-3)
P 		1316.5
(3)
P 		576
C 1219.9
(3)
P 		732.3
(-3)
P 		751.3
(-2.8)
P 		1046.4
(0.9)
P 		488
avr 1177.3
(3) 		732
(-3) 		754
(-2.7) 		1090
(1.8) 		445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 392.7
(-3)
P 		658.8
(3)
P 		437.3
(-2)
P 		554.8
(0.7)
P 		575.2
(1.1)
P 		569.7
(1)
P 		266
B 555.7
(1.1)
P 		608.8
(3)
P 		559.4
(1.2)
P 		585.9
(2.2)
P 		445.3
(-3)
P 		504.3
(-0.8)
P 		164
C 607.8
(3)
P 		607
(2.9)
P 		608.8
(3)
P 		449.9
(-2.4)
P 		557.4
(1.3)
P 		431.5
(-3)
P 		177
avr 518.7
(-2.2) 		624.9
(3) 		535.2
(-1.4) 		530.2
(-1.6) 		526
(-1.8) 		501.8
(-3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 446.5
(3)
P 		153.9
(-2.6)
P 		201.3
(-1.7)
P 		132.8
(-3)
P 		314
B 346.2
(3)
P 		186.4
(-2.5)
P 		171.6
(-3)
P 		280.6
(0.7)
P 		175
C 403.8
(3)
P 		210.5
(-2.1)
P 		261.8
(-0.7)
P 		176.4
(-3)
P 		227
avr 398.8
(3) 		183.6
(-3) 		211.6
(-2.2) 		196.6
(-2.6) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 72.4
(-3)
P 		234.3
(3)
P 		95.2
(-2.2)
P 		140.7
(-0.5)
P 		173.6
(0.8)
P 		138.7
(-0.5)
P 		162
B 193.4
(2.2)
P 		202.6
(3)
P 		135.8
(-3)
P 		155.2
(-1.3)
P 		180.9
(1.1)
P 		188
(1.7)
P 		67
C 225.3
(3)
P 		185.2
(1.2)
P 		154.9
(-0.1)
P 		90.5
(-3)
P 		180.4
(1)
P 		144.4
(-0.6)
P 		135
avr 163.7
(-0.3) 		207.4
(3) 		128.6
(-3) 		128.8
(-3) 		178.3
(0.8) 		157
(-0.8) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6972
Sequence Type Exemplar sequence
Representative Public ID T20B12.6 NCBI
Target Description T20B12.6 /REP_DB=WormBase Gene ID /WP=CE25117 /TR=SW:P41846 /GB=AAA19059.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066230(10), NM_001027602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066230 NCBI Caenorhabditis elegans Myc and Mondo-Like family member (mml-1) (mml-1) mRNA, complete cds. 10/11 A 
NM_001027602 NCBI Caenorhabditis elegans Myc and Mondo-Like family member (mml-1) (mml-1) mRNA, complete cds. 11/11 None
SNAP00000022556 ENSEMBL cdna:SNAP chromosome:CEL140:III:7370352:7374645:-1 11/11 None
GENEFINDER00000022568 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7370352:7374645:-1 10/11 None
T20B12.6a ENSEMBL cdna:known chromosome:CEL140:III:7370051:7374645:-1 gene:T20B12.6 10/11 A 
T20B12.6b ENSEMBL cdna:known chromosome:CEL140:III:7370057:7374645:-1 gene:T20B12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7370349-7374643(-) 100.0 100.0
Public Domain and Genome References
Ensembl T20B12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19059 Myc and mondo-like protein 1, isoform a [Caenorhabditis elegans] ref|NP_498631.2| Myc and Mondo-Like family member (mml-1) [Caenorhabditis elegans] gb|AAK20949.1| Mlx interactor [Caenorhabditis elegans] sp|P41846|WBS14_CAEEL WBSCR14 protein homolog (Mlx interactor) 0.0
blast AAN65289 Myc and mondo-like protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022773.1| Myc and Mondo-Like family member (mml-1) [Caenorhabditis elegans] 0.0
blast AAL50027 basic helix-loop-helix leucine zipper WBSCR14-like protein [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 3.6E-9
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 1.7E-12
Sequence
Target Sequence 
>C. ELEGANS:187597_AT
ggaaggcattacttaccaaccacacccaccgaattgaaggaagtaacaaaagaagaacca
ctgttgatgagtgcaccatcaagtgtcaaatcaatgcgacgacaagctccagattccaca
ttgcacccagaagaacgcaaaagaatattgcatttacacgctgagcaaaaccgaagaagt
gcactgaaagatggattcgaccagcttatggatattatacccgatttgtattctggcggt
gttaagccaacgaatgctgtcgttctagccaagtcagcggatcatattcgaagattgcag
gccgaaaaatgggataaaacacagaagatcgacgaggccaaagcgaaaatcgaaaaactg
aatcagaaaataacatccttacaatcaaatcttccccaatcgagtgcaccatccagttca
tcacaggtggactcgaaaacttcactggaaacatttttcgatagatatgtcaaagaaggc
gcgaaaaagaattggagattttgggtggtctctcttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGGCATTACTTACCAACCACAC 24 533 2284 Antisense
CAACCACACCCACCGAATTGAAGGA 283 185 2300 Antisense
TCAATGCGACGACAAGCTCCAGATT 141 631 2374 Antisense
GATTCCACATTGCACCCAGAAGAAC 496 431 2395 Antisense
AGAATATTGCATTTACACGCTGAGC 525 75 2425 Antisense
ATACCCGATTTGTATTCTGGCGGTG 323 23 2500 Antisense
GAATGCTGTCGTTCTAGCCAAGTCA 606 329 2535 Antisense
GCCAAGTCAGCGGATCATATTCGAA 703 277 2551 Antisense
AACATCCTTACAATCAAATCTTCCC 15 139 2655 Antisense
TGCACCATCCAGTTCATCACAGGTG 179 577 2688 Antisense
GAGATTTTGGGTGGTCTCTCTTGCA 457 397 2778 Antisense
Sequence Source Affymetrix Proprietary Database