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[187594_at]

Description C34E10.7 /REP_DB=WormBase Gene ID /WP=CE01187 /TR=SW:P46581 /GB=AAA19069.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 43      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 6
(-3)
A 		98.5
(3)
A 		7.5
(-2.9)
A 		19.4
(-2.1)
A 		93
B 6.1
(-3)
A 		23.5
(3)
A 		7.4
(-2.6)
A 		9.9
(-1.7)
A 		17
C 7
(-2.8)
A 		31.2
(3)
A 		6.2
(-3)
A 		23.6
(1.2)
A 		25
avr 6.4
(-3) 		51.1
(3) 		7
(-2.9) 		17.6
(-1.5) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 18.2
(-1.7)
A 		64
(3)
A 		14.2
(-2.1)
A 		5.8
(-3)
A 		8.7
(-2.7)
A 		12.9
(-2.3)
A 		58
B 15.1
(1.4)
A 		18.8
(3)
A 		5.8
(-2.5)
A 		4.6
(-3)
A 		6.2
(-2.3)
A 		15.3
(1.5)
A 		14
C 11.9
(-0.9)
A 		25.9
(3)
A 		7.1
(-2.3)
A 		7.8
(-2.1)
A 		4.6
(-3)
A 		13.6
(-0.5)
A 		21
avr 15.1
(-1.2) 		36.2
(3) 		9
(-2.4) 		6.1
(-3) 		6.5
(-2.9) 		13.9
(-1.4) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.2
(-2.9)
A 		21.4
(3)
A 		2
(-3)
A 		2.8
(-2.8)
A 		19
B 1.9
(-2.7)
A 		5.8
(3)
A 		1.7
(-3)
A 		2.1
(-2.4)
A 		4
C 2.3
(-2.9)
A 		9
(3)
A 		2.2
(-3)
A 		4
(-1.4)
A 		7
avr 2.1
(-2.9) 		12.1
(3) 		2
(-3) 		3
(-2.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.4
(-2.5)
A 		22.8
(3)
A 		3.1
(-2.5)
A 		1.5
(-3)
A 		2.6
(-2.7)
A 		3.1
(-2.5)
A 		21
B 5.2
(1.7)
A 		6.3
(3)
A 		1.4
(-2.8)
A 		1.2
(-3)
A 		2.5
(-1.5)
A 		5.7
(2.3)
A 		5
C 4.4
(-0.3)
A 		7.9
(3)
A 		1.8
(-2.7)
A 		1.6
(-2.9)
A 		1.5
(-3)
A 		4.6
(-0.1)
A 		6
avr 4.3
(-1.4) 		12.3
(3) 		2.1
(-2.6) 		1.4
(-3) 		2.2
(-2.6) 		4.5
(-1.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187594_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8090
Sequence Type Exemplar sequence
Representative Public ID C34E10.7 NCBI
Target Description C34E10.7 /REP_DB=WormBase Gene ID /WP=CE01187 /TR=SW:P46581 /GB=AAA19069.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065714 NCBI Caenorhabditis elegans C. elegans Neuro D homolog family member (cnd-1) (cnd-1) mRNA, complete cds. 11/11 None
SNAP00000034356 ENSEMBL cdna:SNAP chromosome:CEL140:III:5240692:5242001:-1 11/11 None
GENEFINDER00000034369 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5240692:5242001:-1 11/11 None
C34E10.7 ENSEMBL cdna:known chromosome:CEL140:III:5240692:5242001:-1 gene:C34E10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5240690-5242000(-) 87.91 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cnd-1
Ensembl C34E10.7
Entrez Gene 183212 Entrez gene
SwissProt P46581 EMBL-EBI
WormBase CE01187 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.21890.1.S1_AT similar to Neurogenic differentiation factor 1 (NeuroD1) (NeuroD) cfa
CHICKEN:GGA.1840.1.S1_AT neurogenic differentiation 1 gga
CHICKEN:GGA.1840.1.S2_AT neurogenic differentiation 1 gga
HG-U133_PLUS_2:206282_AT neurogenic differentiation 1 hs
HG-U133A:206282_AT neurogenic differentiation 1 hs
HG-FOCUS:206282_AT neurogenic differentiation 1 hs
HG-U133A_2:206282_AT neurogenic differentiation 1 hs
HUGENEFL:U50822_RNA1_S_AT neurogenic differentiation 1 hs
HUGENEFL:D82347_AT neurogenic differentiation 1 hs
U133_X3P:G4505376_3P_AT neurogenic differentiation 1 hs
U133_X3P:HS2.407438.1.S1_3P_S_AT neurogenic differentiation 1 hs
HG-U133_PLUS_2:1556057_S_AT neurogenic differentiation 1 hs
HG-U95AV2:36768_AT neurogenic differentiation 1 hs
MOUSE430_2:1426412_AT neurogenic differentiation 1 mm
MOE430A:1426412_AT neurogenic differentiation 1 mm
MOUSE430A_2:1426412_AT neurogenic differentiation 1 mm
MU11KSUBA:U28068_S_AT neurogenic differentiation 1 mm
MG-U74AV2:92717_AT neurogenic differentiation 1 mm
MG-U74BV2:163624_I_AT neurogenic differentiation 1 mm
MOE430A:1426413_AT neurogenic differentiation 1 mm
MOUSE430A_2:1426413_AT neurogenic differentiation 1 mm
MOUSE430_2:1426413_AT neurogenic differentiation 1 mm
RG-U34A:D82074_AT neurogenic differentiation 1 rn
RG-U34A:D82074_G_AT neurogenic differentiation 1 rn
RAE230A:1387288_AT neurogenic differentiation 1 rn
RAT230_2:1387288_AT neurogenic differentiation 1 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA19069 C. elegans neuro d homolog protein 1 [Caenorhabditis elegans] ref|NP_498115.1| C. elegans Neuro D homolog family member (cnd-1) [Caenorhabditis elegans] sp|P46581|YLB7_CAEEL Hypothetical protein C34E10.7 in chromosome III 4.0E-59
blast CAE73666 Hypothetical protein CBG21175 [Caenorhabditis briggsae] 5.0E-50
blast BAD91311.1 transcription factor HpNeuroD [Hemicentrotus pulcherrimus] 5.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.4E-19
Sequence
Target Sequence 
>C. ELEGANS:187594_AT
atgcgtcctactgatacttcaaactttgctccagccgaaatttcaaagcgaaaagttcga
cgagtgaaagcaaatggaagagaaagagcaagaatgcatggtttgaataatgcattggat
atgctcagagagtatattccaattactactcaacatcagaaacttagcaaaattgagact
ttgagactcgcaaggaattacattgatgctcttcaaagaatgttgcaaacaaacgaacaa
ccaactccacttgaatatgctcacacacttgccaatggattgtcacagactaccacgaat
atgttggctaacttgttgcaggtccaacctcgtcaactccttccaccatcacaattcgac
atcttctctgatccatcccatcatcaacttcatccatctcatccaccaccacattcatcc
ttctcatcatcatcaccatcatcttcatgttctccacctcaatattattattctccaact
caaccatcagctgctccacttcaaggatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGTCCTACTGATACTTCAAACT 250 41 13 Antisense
TGCTCCAGCCGAAATTTCAAAGCGA 412 581 39 Antisense
AACGAACAACCAACTCCACTTGAAT 375 143 244 Antisense
GAATATGCTCACACACTTGCCAATG 161 327 265 Antisense
GGATTGTCACAGACTACCACGAATA 235 509 289 Antisense
TAACTTGTTGCAGGTCCAACCTCGT 361 635 321 Antisense
ACAATTCGACATCTTCTCTGATCCA 708 113 363 Antisense
TCATCACCATCATCTTCATGTTCTC 342 621 442 Antisense
CATGTTCTCCACCTCAATATTATTA 172 211 458 Antisense
TTATTATTCTCCAACTCAACCATCA 322 679 477 Antisense
TCAGCTGCTCCACTTCAAGGATCAT 517 625 499 Antisense
Sequence Source Affymetrix Proprietary Database