[Home] | [Total List]

[187593_at]

Description K01A12.2 /REP_DB=WormBase Gene ID /WP=CE01987 /TR=SW:Q10041 /GB=AAA64339.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 59.5
(0.5)
A 		12.6
(-3)
A 		53.6
(0.1)
A 		92.2
(3)
A 		80
B 116.5
(3)
A 		104.2
(2.3)
A 		15.5
(-3)
A 		94
(1.7)
A 		101
C 80.8
(3)
A 		47.8
(-2.2)
A 		59
(-0.4)
A 		42.8
(-3)
A 		38
avr 85.6
(3) 		54.9
(-1.3) 		42.7
(-3) 		76.3
(1.7) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 93
(2.5)
A 		54.5
(-0.3)
A 		17.9
(-3)
A 		66.2
(0.5)
A 		100.3
(3)
A 		51
(-0.6)
A 		82
B 68.5
(2.5)
A 		44.9
(-3)
A 		70.8
(3)
A 		62.6
(1.1)
A 		60.4
(0.6)
A 		57.5
(-0.1)
A 		26
C 64
(0.6)
A 		65.2
(0.7)
A 		37.1
(-3)
A 		82.3
(3)
A 		56.3
(-0.5)
A 		40.4
(-2.6)
A 		45
avr 75.2
(3) 		54.9
(-0.7) 		41.9
(-3) 		70.4
(2.1) 		72.3
(2.5) 		49.6
(-1.6) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 21.7
(3)
A 		2.7
(-3)
A 		14
(0.6)
A 		13.5
(0.4)
A 		19
B 37.2
(3)
A 		25.7
(0.9)
A 		3.6
(-3)
A 		20
(-0.1)
A 		34
C 26.7
(3)
A 		13.7
(-1)
A 		20.6
(1.1)
A 		7.2
(-3)
A 		20
avr 28.5
(3) 		14
(-2.5) 		12.7
(-3) 		13.6
(-2.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 17.1
(0)
A 		19.4
(0.5)
A 		3.9
(-3)
A 		16.8
(-0.1)
A 		30.3
(3)
A 		12.4
(-1.1)
A 		26
B 23.8
(2.6)
A 		14.9
(-3)
A 		17.2
(-1.6)
A 		16.6
(-1.9)
A 		24.5
(3)
A 		21.5
(1.1)
A 		10
C 23.7
(3)
A 		19.9
(1.4)
A 		9.4
(-3)
A 		16.5
(-0)
A 		18.2
(0.7)
A 		13.5
(-1.3)
A 		14
avr 21.5
(1.8) 		18.1
(0.4) 		10.2
(-3) 		16.6
(-0.3) 		24.3
(3) 		15.8
(-0.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15975
Sequence Type Exemplar sequence
Representative Public ID K01A12.2 NCBI
Target Description K01A12.2 /REP_DB=WormBase Gene ID /WP=CE01987 /TR=SW:Q10041 /GB=AAA64339.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077060(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077060 NCBI Caenorhabditis elegans K01A12.2 (K01A12.2) mRNA, complete cds. 9/11 None
GENEFINDER00000032967 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8618195:8619693:1 9/11 None
K01A12.2 ENSEMBL cdna:known chromosome:CEL140:X:8618354:8618839:1 gene:K01A12.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032964 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8618352-8618858(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A12.2
Entrez Gene 186831 Entrez gene
SwissProt Q10041 EMBL-EBI
WormBase CE35734 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64339 Hypothetical protein K01A12.2 [Caenorhabditis elegans] ref|NP_509461.2| K01A12.2 [Caenorhabditis elegans] sp|Q10041|YRC2_CAEEL Hypothetical protein K01A12.2 in chromosome X 8.0E-48
blast CAE69350 Hypothetical protein CBG15436 [Caenorhabditis briggsae] 3.0E-21
Sequence
Target Sequence 
>C. ELEGANS:187593_AT
gacagtcaaacgacgtcttgctcccagattaagctttccaatttggttttcccacccaga
cttcagattgctgttcttaatcttttttcaaagtgcgtattttttgcagaacttctttct
cgacccgcctcttcatcattcgacaacgacgagagaatgggagcgtgctcatcgtgcttg
cgtcttctgctcgacgccgaatccgacgtcaaaatccatggtaggtaatccgcccagaaa
atcttgtgttcacgtatgtaaaaaccaaaattatcgaaccaacttcgatcaacaatggag
agggctcatcagtagtccatcgcgacgcaacagcaccaccaacgccacccgttgtgccaa
cctcaacgttacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGTCAAACGACGTCTTGCTCCC 124 369 18 Antisense
GTCTTGCTCCCAGATTAAGCTTTCC 34 469 32 Antisense
TCCCACCCAGACTTCAGATTGCTGT 326 597 67 Antisense
TTTTGCAGAACTTCTTTCTCGACCC 124 679 119 Antisense
CCTCTTCATCATTCGACAACGACGA 495 267 145 Antisense
GAATGGGAGCGTGCTCATCGTGCTT 341 333 172 Antisense
CGCCGAATCCGACGTCAAAATCCAT 370 253 212 Antisense
ATCCATGGTAGGTAATCCGCCCAGA 129 37 231 Antisense
TCCGCCCAGAAAATCTTGTGTTCAC 24 597 246 Antisense
GGAGAGGGCTCATCAGTAGTCCATC 269 519 314 Antisense
GTTGTGCCAACCTCAACGTTACAAG 66 433 368 Antisense
Sequence Source Affymetrix Proprietary Database