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[187592_s_at]

Description C34E10.4 /REP_DB=WormBase Gene ID /WP=CE01184 /TR=SW:P46579 /GB=AAA19066.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_high_8_8 > 15      6grp_highest_nonorm > 91      6grp_total > 67      4grp_total > 16      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 140
(-2.8)
P 		135.4
(-3)
A 		142.2
(-2.8)
P 		306.5
(3)
P 		171
B 90.7
(-3)
P 		172.7
(1.3)
P 		146
(-0.1)
P 		204
(3)
P 		113
C 145
(-1.3)
P 		118.7
(-3)
P 		210.3
(3)
P 		209
(2.9)
P 		92
avr 125.2
(-3) 		142.3
(-2.1) 		166.2
(-0.9) 		239.8
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 164.7
(-2.5)
P 		156.1
(-3)
P 		210.8
(0.2)
P 		180.9
(-1.5)
P 		156.3
(-3)
P 		258
(3)
P 		102
B 171.7
(-2.6)
P 		167
(-2.8)
P 		166.3
(-2.8)
P 		180.8
(-2.4)
P 		158.3
(-3)
P 		383.9
(3)
P 		226
C 189.6
(-1.4)
P 		163.7
(-2.1)
P 		165.1
(-2.1)
P 		129.4
(-3)
P 		138.8
(-2.8)
P 		361.9
(3)
P 		233
avr 175.3
(-2.2) 		162.3
(-2.6) 		180.7
(-2) 		163.7
(-2.6) 		151.1
(-3) 		334.6
(3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 51
(3)
P 		29.4
(-3)
A 		37.2
(-0.8)
P 		44.9
(1.3)
P 		22
B 28.9
(-3)
P 		42.7
(2.7)
P 		33.8
(-1)
P 		43.5
(3)
P 		15
C 48
(-0.9)
P 		34.1
(-3)
P 		73.3
(3)
P 		35.2
(-2.8)
P 		39
avr 42.6
(0.4) 		35.4
(-3) 		48.1
(3) 		41.2
(-0.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 30.4
(-3)
P 		55.5
(1.6)
P 		45.9
(-0.1)
P 		45.9
(-0.1)
P 		47.2
(0.1)
P 		62.8
(3)
P 		32
B 59.7
(-1.9)
P 		55.6
(-2.1)
P 		40.4
(-3)
P 		47.9
(-2.6)
P 		64.3
(-1.6)
P 		143.2
(3)
P 		103
C 70.3
(-0.2)
P 		49.9
(-1.5)
P 		42
(-2)
P 		26
(-3)
P 		44.9
(-1.8)
P 		121.1
(3)
P 		95
avr 53.5
(-1.8) 		53.7
(-1.8) 		42.8
(-2.7) 		39.9
(-3) 		52.1
(-1.9) 		109
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187592_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7993
Sequence Type Exemplar sequence
Representative Public ID C34E10.4 NCBI
Target Description C34E10.4 /REP_DB=WormBase Gene ID /WP=CE01184 /TR=SW:P46579 /GB=AAA19066.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026029(11), NM_001026030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026029 NCBI Caenorhabditis elegans tryptophanyl (W) tRNA Synthetase family member (wrs-2) (wrs-2) mRNA, complete cds. 11/11 None
NM_001026030 NCBI Caenorhabditis elegans tryptophanyl (W) tRNA Synthetase family member (wrs-2) (wrs-2) mRNA, complete cds. 11/11 None
SNAP00000034355 ENSEMBL cdna:SNAP chromosome:CEL140:III:5236388:5239884:1 11/11 None
GENEFINDER00000034364 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5236388:5239884:1 11/11 None
C34E10.4a ENSEMBL cdna:known chromosome:CEL140:III:5235911:5239985:1 gene:C34E10.4 11/11 None
C34E10.4b ENSEMBL cdna:known chromosome:CEL140:III:5236849:5239884:1 gene:C34E10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5238170-5239883(+) 100.0 100.0
Public Domain and Genome References
Ensembl C34E10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19066 Tryptophanyl (w) trna synthetase protein 2, isoform a [Caenorhabditis elegans] ref|NP_001021200.1| tryptophanyl (W) tRNA Synthetase family member (wrs-2) [Caenorhabditis elegans] sp|P46579|SYWM_CAEEL Probable tryptophanyl-tRNA synthetase, mitochondrial (Tryptophan--tRNA ligase) (TrpRS) 0.0
blast CAE73661 Hypothetical protein CBG21169 [Caenorhabditis briggsae] 0.0
blast AAV34793 Tryptophanyl (w) trna synthetase protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021201.1| tryptophanyl (W) tRNA Synthetase family member (wrs-2) [Caenorhabditis elegans] dbj|BAC76734.1| tryptophanyl-tRNA synthetase (mitochondrial) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.8E-9
Pfam IPR006845 EMBL-EBI Pex2 / Pex12, N-terminal 2.8E-67
Pfam IPR002305 EMBL-EBI Aminoacyl-tRNA synthetase, class Ib 9.6E-98
Pfam IPR002305 EMBL-EBI Aminoacyl-tRNA synthetase, class Ib 9.6E-98
Pfam IPR002305 EMBL-EBI Aminoacyl-tRNA synthetase, class Ib 9.6E-98
Sequence
Target Sequence 
>C. ELEGANS:187592_S_AT
tccagttggactccttacgtatcctctccttcaagcagctgatgttcttacatttaaagc
cacaacagttccagttggagaagatcaaagtcaacatttaaatcttcttggaggacttgc
ttacgcatttaataaaacttatgagactgaaatctttccgattccaaagcagttaacacg
agaatctcatgcaagaattcgatcattaagagaacctgaaaagaaaatgagcaaatcatc
aggaggaccgaggagtcgtattgagatcacagacagccgttccacaattatcgagaaatg
tcaaaaagcacaaagtgacaatgctggaaaagtgacatatgataaggaaaaccggttagc
tgtttccaatttgcttgatctctattcggcagtcaccaaaactcaaacatcagagatcga
cttctcaaattggacaactttagatttgaaaatgaatttggctgaagcagttgataaacg
actagctccaattcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAGTTGGACTCCTTACGTATCCT 682 587 444 Antisense
TCCTCTCCTTCAAGCAGCTGATGTT 333 593 465 Antisense
GATGTTCTTACATTTAAAGCCACAA 394 409 484 Antisense
AAGCCACAACAGTTCCAGTTGGAGA 104 149 500 Antisense
TCTTCTTGGAGGACTTGCTTACGCA 654 615 546 Antisense
GAGACTGAAATCTTTCCGATTCCAA 706 393 586 Antisense
TTCCGATTCCAAAGCAGTTAACACG 516 697 599 Antisense
GAGCAAATCATCAGGAGGACCGAGG 578 389 672 Antisense
ACAGACAGCCGTTCCACAATTATCG 234 109 712 Antisense
GATCGACTTCTCAAATTGGACAACT 164 417 858 Antisense
GATAAACGACTAGCTCCAATTCGAC 492 407 916 Antisense
Sequence Source Affymetrix Proprietary Database