[Home] | [Total List]

[187589_at]

Description C35C5.8 /REP_DB=WormBase Gene ID /WP=CE08586 /CHR=X /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q93334 protein_id:CAB01690.1
Cluster 6grp_total > 72      4grp_total > 39      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 149.1
(3)
A 		65
(-3)
A 		83.6
(-1.7)
A 		95.4
(-0.8)
A 		84
B 185.4
(3)
P 		88.3
(-2.7)
A 		92.8
(-2.4)
A 		82.4
(-3)
A 		103
C 170.8
(3)
P 		63.6
(-3)
A 		64.8
(-2.9)
P 		138
(1.2)
P 		107
avr 168.4
(3) 		72.3
(-3) 		80.4
(-2.5) 		105.3
(-0.9) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 63.5
(-3)
A 		126.3
(-1.4)
P 		300.2
(3)
P 		250
(1.7)
P 		206.5
(0.6)
P 		96.4
(-2.2)
A 		237
B 87.5
(-3)
M 		114.2
(-2.2)
M 		184
(-0.1)
P 		285.3
(3)
P 		260.1
(2.2)
P 		112.4
(-2.2)
M 		198
C 58.8
(-3)
A 		140.5
(0.4)
M 		203.1
(3)
P 		173.6
(1.8)
P 		174.4
(1.8)
P 		106.5
(-1)
P 		144
avr 69.9
(-3) 		127
(-0.9) 		229.1
(2.7) 		236.3
(3) 		213.7
(2.2) 		105.1
(-1.7) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 54.3
(3)
A 		14.1
(-3)
A 		21.9
(-1.8)
A 		14
(-3)
A 		40
B 59.1
(3)
P 		21.8
(-2.4)
A 		21.5
(-2.4)
A 		17.6
(-3)
A 		42
C 56.5
(3)
P 		18.3
(-3)
A 		22.6
(-2.3)
P 		23.3
(-2.2)
P 		38
avr 56.6
(3) 		18.1
(-3) 		22
(-2.4) 		18.3
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 11.7
(-3)
A 		44.9
(0.7)
P 		65.4
(3)
P 		63.4
(2.8)
P 		62.3
(2.7)
P 		23.5
(-1.7)
A 		54
B 30.4
(-3)
M 		38
(-2.4)
M 		44.7
(-1.9)
P 		75.6
(0.6)
P 		105.7
(3)
P 		41.9
(-2.1)
M 		75
C 21.8
(-3)
A 		42.9
(0.7)
M 		51.7
(2.2)
P 		34.9
(-0.7)
P 		56.4
(3)
P 		35.7
(-0.6)
P 		35
avr 21.3
(-3) 		41.9
(-0.7) 		53.9
(0.7) 		58
(1.1) 		74.8
(3) 		33.7
(-1.6) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16714
Sequence Type Exemplar sequence
Representative Public ID C35C5.8 NCBI
Target Description C35C5.8 /REP_DB=WormBase Gene ID /WP=CE08586 /CHR=X /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q93334 protein_id:CAB01690.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077525 NCBI Caenorhabditis elegans C35C5.8b (C35C5.8) mRNA, complete cds. 11/11 None
C35C5.8b ENSEMBL cdna:known chromosome:CEL140:X:11535551:11536288:1 gene:C35C5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077524 6/11 Cross Hyb Matching Probes A 
SNAP00000005102 6/11 Cross Hyb Matching Probes None
C35C5.8a 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181342 2 1 NM_077524 187598_at (11)
NM_077525 187589_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11535630-11536288(+) 100.0 100.0
Public Domain and Genome References
Ensembl C35C5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01690 Hypothetical protein C35C5.8b [Caenorhabditis elegans] ref|NP_509926.2| C35C5.8b [Caenorhabditis elegans] 5.0E-45
blast CAC42263 Hypothetical protein C35C5.8a [Caenorhabditis elegans] ref|NP_509925.1| C35C5.8a [Caenorhabditis elegans] 5.0E-45
blast CAE70622 Hypothetical protein CBG17306 [Caenorhabditis briggsae] 3.0E-41
Sequence
Target Sequence 
>C. ELEGANS:187589_AT
atggaaacgttttgttcttgcgcacggcgattcagtagaaaccatcaaacatggactcgt
gagatgttaactgctgtatctgcagtaatgattgtgctgagcttttttacgaattgtcat
cacacaagcctaatttcaggcaaccatttgttagatttggagaacgacgatgatcagttt
cttacaatgaaagagcatgttcaatcggtttttgggaaagcgctccgaacaattgctgag
atagaaggagaaaaatgtgatgcgttggacaaagttttgaaatgtgtattgccacgtgtt
gaagaaaaatgtggtcgagaagcagtgacaataatggaatcaagtattcttgtcggctac
ttatcaacgcagcgacgagaaccgttggcttctcagtttaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAAACGTTTTGTTCTTGCGCAC 578 51 13 Antisense
GTTCTTGCGCACGGCGATTCAGTAG 523 443 26 Antisense
GGACTCGTGAGATGTTAACTGCTGT 557 523 65 Antisense
GTGCTGAGCTTTTTTACGAATTGTC 572 479 106 Antisense
TGTCATCACACAAGCCTAATTTCAG 101 559 127 Antisense
GAACGACGATGATCAGTTTCTTACA 70 347 174 Antisense
GAGCATGTTCAATCGGTTTTTGGGA 152 373 205 Antisense
GAAAGCGCTCCGAACAATTGCTGAG 70 359 228 Antisense
TCTTGTCGGCTACTTATCAACGCAG 705 617 360 Antisense
CGCAGCGACGAGAACCGTTGGCTTC 690 251 380 Antisense
GAACCGTTGGCTTCTCAGTTTAAAG 173 345 391 Antisense
Sequence Source Affymetrix Proprietary Database