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[187588_s_at]

Description C34E10.8 /REP_DB=WormBase Gene ID /WP=CE01188 /TR=SW:P46582 /GB=AAA19070.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_high_8_8 > 52      6grp_highest_nonorm > 82      6grp_total > 69      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 236.5
(-0.5)
P 		299.9
(2.1)
P 		321.2
(3)
P 		177.9
(-3)
P 		143
B 323
(3)
P 		299.3
(1.2)
P 		269.5
(-1.2)
P 		245.8
(-3)
P 		77
C 287.9
(2.4)
P 		186.7
(-3)
A 		298.9
(3)
P 		256.8
(0.7)
P 		112
avr 282.5
(1.8) 		262
(0) 		296.5
(3) 		226.8
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 286
(-1)
P 		378.4
(0.8)
P 		183.5
(-3)
P 		304.8
(-0.6)
P 		318.4
(-0.3)
P 		488.9
(3)
P 		305
B 323
(0.9)
P 		298
(0)
P 		212.8
(-3)
P 		235.1
(-2.2)
P 		287
(-0.4)
P 		380.9
(3)
P 		168
C 411.8
(3)
P 		404.2
(2.6)
P 		285.9
(-3)
P 		286.6
(-3)
P 		362.8
(0.7)
P 		411.1
(3)
P 		126
avr 340.3
(0.4) 		360.2
(1) 		227.4
(-3) 		275.5
(-1.6) 		322.7
(-0.1) 		427
(3) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 86.1
(3)
P 		65.1
(0.9)
P 		84
(2.8)
P 		26
(-3)
P 		60
B 103
(3)
P 		73.9
(-0.5)
P 		62.4
(-1.8)
P 		52.4
(-3)
P 		51
C 95.3
(2.1)
P 		53.7
(-2)
A 		104.2
(3)
P 		43.3
(-3)
P 		61
avr 94.8
(3) 		64.2
(-0.4) 		83.5
(1.7) 		40.6
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 52.7
(-2.2)
P 		134.6
(3)
P 		40
(-3)
P 		77.3
(-0.6)
P 		96.1
(0.6)
P 		119
(2)
P 		95
B 112.4
(1)
P 		99.2
(0.2)
P 		51.7
(-3)
P 		62.3
(-2.3)
P 		116.6
(1.3)
P 		142
(3)
P 		90
C 152.6
(3)
P 		123.3
(1.1)
P 		72.8
(-2)
P 		57.6
(-3)
P 		117.4
(0.8)
P 		137.6
(2.1)
P 		95
avr 105.9
(0.9) 		119
(1.9) 		54.8
(-3) 		65.7
(-2.2) 		110
(1.2) 		132.9
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187588_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6074
Sequence Type Exemplar sequence
Representative Public ID C34E10.8 NCBI
Target Description C34E10.8 /REP_DB=WormBase Gene ID /WP=CE01188 /TR=SW:P46582 /GB=AAA19070.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065715(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065715 NCBI Caenorhabditis elegans C34E10.8 (C34E10.8) mRNA, complete cds. 11/11 None
SNAP00000034358 ENSEMBL cdna:SNAP chromosome:CEL140:III:5249228:5254143:-1 11/11 None
GENEFINDER00000034366 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5249228:5254143:-1 11/11 None
C34E10.8 ENSEMBL cdna:known chromosome:CEL140:III:5249045:5254148:-1 gene:C34E10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5249226-5254142(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34E10.8
Entrez Gene 175720 Entrez gene
SwissProt P46582 EMBL-EBI
WormBase CE32158 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19070 Hypothetical protein C34E10.8 [Caenorhabditis elegans] ref|NP_498116.2| C34E10.8 [Caenorhabditis elegans] sp|P46582|YLB8_CAEEL Hypothetical protein C34E10.8 in chromosome III 0.0
blast CAE73675 Hypothetical protein CBG21184 [Caenorhabditis briggsae] 1.0E-176
blast CAE73675 Hypothetical protein CBG21184 [Caenorhabditis briggsae] 1.0E-175
Sequence
Target Sequence 
>C. ELEGANS:187588_S_AT
gaatcatcagtggatccgcaatcagatgtatcattttcgaatccttcaccagctccagaa
gttatagaaaaagttgcaccagctgcgatgacaataacttccaataaacggaaaatcgat
gaaactttggcatctgaatcaacatcttcggaggctacattaatacacgatacaacttct
tcttcttctgcagagacagtgtctggagagcctccagcaaagaaatcatcagatgtttca
gcacctgtgccatctccagaaaaggaaaaggagaaaatagatcgtccaaaaactccaaaa
tcatctacaaaacggacaacaccaactccatccggaagaacaccacgggcggccgcaatt
gcagcgaatcaagctatttctcattcaaaacctaatgttccctctgcgtctacatcttct
tcggctgcttccaccgatcaagagaatccgctagatttgcttgctgaattgtcggtagct
gcagctgctgaagagcaacaacaagcaatagggagtacgtcgaaaaatggaggaagcaca
aagaaaacgcaaagaaagtcaccttctcgttcatcaatagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATCAGTGGATCCGCAATCAG 80 329 2455 Antisense
GTATCATTTTCGAATCCTTCACCAG 607 453 2482 Antisense
AAGTTGCACCAGCTGCGATGACAAT 366 155 2525 Antisense
AATCAACATCTTCGGAGGCTACATT 464 171 2591 Antisense
ACACGATACAACTTCTTCTTCTTCT 38 111 2619 Antisense
AGAGACAGTGTCTGGAGAGCCTCCA 489 69 2646 Antisense
TCAGATGTTTCAGCACCTGTGCCAT 21 625 2683 Antisense
TTCAAAACCTAATGTTCCCTCTGCG 93 681 2838 Antisense
GCTGCTTCCACCGATCAAGAGAATC 374 297 2878 Antisense
TGAATTGTCGGTAGCTGCAGCTGCT 689 575 2919 Antisense
AGTCACCTTCTCGTTCATCAATAGG 396 61 3011 Antisense
Sequence Source Affymetrix Proprietary Database