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[187587_at]

Description F58F12.2 /REP_DB=WormBase Gene ID /WP=CE07305 /TR=SW:Q09399 /GB=AAC46700.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 0.9
(-3)
A 		33.6
(3)
A 		2.1
(-2.8)
A 		12.4
(-0.9)
A 		33
B 4.5
(-1.8)
A 		5.8
(-1.2)
A 		1.7
(-3)
A 		15.6
(3)
A 		14
C 3.6
(-3)
A 		27.6
(3)
A 		4.3
(-2.8)
A 		17.7
(0.5)
A 		24
avr 3
(-2.9) 		22.3
(3) 		2.7
(-3) 		15.2
(0.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 4.1
(-2.7)
A 		2.6
(-2.8)
A 		16.7
(-1.2)
A 		1.3
(-3)
A 		36.2
(1.1)
A 		52.5
(3)
A 		51
B 0.9
(-3)
A 		2.6
(-2.4)
A 		18.5
(3)
A 		4.9
(-1.6)
A 		6.7
(-1)
A 		10.9
(0.4)
A 		18
C 5.2
(-2.8)
A 		4.1
(-3)
A 		5.8
(-2.7)
A 		29.8
(1.1)
A 		14.7
(-1.3)
A 		41.8
(3)
P 		38
avr 3.4
(-2.9) 		3.1
(-3) 		13.7
(-1) 		12
(-1.3) 		19.2
(0) 		35.1
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.3
(-3)
A 		7.3
(3)
A 		0.6
(-2.7)
A 		1.8
(-1.7)
A 		7
B 1.4
(-0.9)
A 		1.4
(-0.9)
A 		0.4
(-3)
A 		3.3
(3)
A 		3
C 1.2
(-3)
A 		7.9
(3)
A 		1.5
(-2.7)
A 		3
(-1.4)
A 		7
avr 1
(-2.7) 		5.5
(3) 		0.8
(-3) 		2.7
(-0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.8
(-2.8)
A 		0.9
(-2.7)
A 		3.6
(-1.4)
A 		0.3
(-3)
A 		10.9
(2.1)
A 		12.8
(3)
A 		13
B 0.3
(-3)
A 		0.9
(-2.1)
A 		4.5
(3)
A 		1.3
(-1.6)
A 		2.7
(0.4)
A 		4.1
(2.4)
A 		4
C 1.9
(-2.7)
A 		1.3
(-3)
A 		1.5
(-2.9)
A 		6
(-0.8)
A 		4.7
(-1.4)
A 		14
(3)
P 		13
avr 1
(-3) 		1
(-3) 		3.2
(-1.6) 		2.5
(-2) 		6.1
(0.3) 		10.3
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187587_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5765
Sequence Type Exemplar sequence
Representative Public ID F58F12.2 NCBI
Target Description F58F12.2 /REP_DB=WormBase Gene ID /WP=CE07305 /TR=SW:Q09399 /GB=AAC46700.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062886 NCBI Caenorhabditis elegans F58F12.2 (F58F12.2) mRNA, complete cds. 11/11 None
F58F12.2 ENSEMBL cdna:known chromosome:CEL140:II:6387472:6388189:-1 gene:F58F12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028381 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028383 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6387468-6388186(-) 87.83 100.0
Public Domain and Genome References
Gene Title
Ensembl F58F12.2
Entrez Gene 186538 Entrez gene
SwissProt Q09399 EMBL-EBI
WormBase CE07305 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46700 Hypothetical protein F58F12.2 [Caenorhabditis elegans] ref|NP_495287.1| F58F12.2 [Caenorhabditis elegans] sp|Q09399|YRB2_CAEEL Hypothetical protein F58F12.2 in chromosome II 4.0E-59
blast T16502 hypothetical protein F58F12.2 - Caenorhabditis elegans 5.0E-43
blast CAE59309 Hypothetical protein CBG02645 [Caenorhabditis briggsae] 3.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495287.1 1 15-37
F58F12.2 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:187587_AT
gacagacagcaatttattctatttttaaatttttattcaaattattttttaaatttgtga
actatctttggaatagtcacaaatttcacgagcaactcgttcttcacaatttaaggaaac
gactcacgcaactaatcaaagtggatgtgaaccgaatgattccattggaaaaaattcaca
tgtggactaagtacatcgccgacgaagtgttccgttcgattccagatggcgatcatgatc
ttgatgttgtgatcactatcgatttttcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGACAGCAATTTATTCTATTTT 348 369 50 Antisense
AATAGTCACAAATTTCACGAGCAAC 157 173 121 Antisense
TTCACGAGCAACTCGTTCTTCACAA 106 687 134 Antisense
GGAAACGACTCACGCAACTAATCAA 566 527 164 Antisense
GGATGTGAACCGAATGATTCCATTG 290 515 192 Antisense
TGTGGACTAAGTACATCGCCGACGA 398 555 230 Antisense
ACATCGCCGACGAAGTGTTCCGTTC 414 105 242 Antisense
TGTTCCGTTCGATTCCAGATGGCGA 615 561 257 Antisense
GATTCCAGATGGCGATCATGATCTT 534 431 267 Antisense
GGCGATCATGATCTTGATGTTGTGA 637 541 277 Antisense
GTTGTGATCACTATCGATTTTTCGG 399 437 295 Antisense
Sequence Source Affymetrix Proprietary Database