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[187586_at]

Description C34E10.1 /REP_DB=WormBase Gene ID /WP=CE26880 /TR=SW:P46576 /GB=AAA19063.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 21      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 66      6grp_total > 31      4grp_total > 61      6grp_highest_sub > 03_04      6grp_cgc > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1289
1 2 3 4 range
A 1758.7
(3)
P 		1279.1
(0.7)
P 		1357.3
(1.1)
P 		494.5
(-3)
P 		1264
B 1783.4
(3)
P 		1198
(-0.1)
P 		1281.4
(0.4)
P 		640.6
(-3)
P 		1143
C 1712.8
(3)
P 		1314.6
(1)
P 		1435.4
(1.6)
P 		508.5
(-3)
P 		1204
avr 1751.6
(3) 		1263.9
(0.6) 		1358
(1) 		547.9
(-3) 		1204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 827
1 2 3 4 5 6 range
A 1312.4
(0.7)
P 		1519
(2.9)
P 		1401.3
(1.6)
P 		1532.6
(3)
P 		1187.1
(-0.6)
P 		952.3
(-3)
P 		580
B 1605.9
(2)
P 		1586.1
(1.8)
P 		1720
(3)
P 		1596
(1.9)
P 		1193
(-1.8)
P 		1059.7
(-3)
P 		660
C 1611.8
(2.3)
P 		1585.8
(2.1)
P 		1703.7
(3)
P 		1649.2
(2.6)
P 		1049.7
(-1.8)
P 		893.3
(-3)
P 		810
avr 1510
(2.1) 		1563.6
(2.6) 		1608.3
(3) 		1592.6
(2.9) 		1143.3
(-1.4) 		968.4
(-3) 		640
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 568
1 2 3 4 range
A 640.4
(3)
P 		277.7
(-0.8)
P 		354.8
(-0)
P 		72.4
(-3)
P 		568
B 568.7
(3)
P 		295.9
(-0.8)
P 		296.9
(-0.8)
P 		136.5
(-3)
P 		432
C 567
(3)
P 		377.9
(0.6)
P 		500.3
(2.2)
P 		85.7
(-3)
P 		481
avr 592
(3) 		317.2
(-0.3) 		384
(0.5) 		98.2
(-3) 		494

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 241.9
(-2.8)
P 		540.2
(3)
P 		305.2
(-1.6)
P 		388.7
(0.1)
P 		358.2
(-0.5)
P 		231.8
(-3)
P 		308
B 558.8
(3)
P 		527.9
(1.9)
P 		417.7
(-2.2)
P 		422.7
(-2)
P 		484.7
(0.3)
P 		395.2
(-3)
P 		164
C 597.4
(3)
P 		483.9
(0.7)
P 		433.6
(-0.3)
P 		331.7
(-2.3)
P 		339.7
(-2.2)
P 		299.1
(-3)
P 		298
avr 466
(1.5) 		517.3
(3) 		385.5
(-0.8) 		381
(-0.9) 		394.2
(-0.5) 		308.7
(-3) 		209
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6600
Sequence Type Exemplar sequence
Representative Public ID C34E10.1 NCBI
Target Description C34E10.1 /REP_DB=WormBase Gene ID /WP=CE26880 /TR=SW:P46576 /GB=AAA19063.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065718 NCBI Caenorhabditis elegans Gro-1 OPeron gene family member (gop-3) (gop-3) mRNA, complete cds. 11/11 A 
GENEFINDER00000034363 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5260665:5262603:1 11/11 None
C34E10.1.2 ENSEMBL cdna:known chromosome:CEL140:III:5260649:5263794:1 gene:C34E10.1 11/11 A 
C34E10.1.3 ENSEMBL cdna:known chromosome:CEL140:III:5260650:5263794:1 gene:C34E10.1 11/11 None
C34E10.1.1 ENSEMBL cdna:known chromosome:CEL140:III:5260651:5263794:1 gene:C34E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5260663-5262602(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gop-3
Ensembl C34E10.1
Entrez Gene 175723 Entrez gene
WormBase CE26880 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1594727_AT similar to SAM50-like protein CGI-51 cfa
CANINE:1583394_S_AT similar to SAM50-like protein CGI-51 cfa
CANINE_2:CFA.11724.1.A1_S_AT similar to SAM50-like protein CGI-51 cfa
CANINE_2:CFA.20945.1.S1_S_AT similar to SAM50-like protein CGI-51 cfa
CANINE_2:CFA.6368.1.A1_S_AT similar to SAM50-like protein CGI-51 cfa
DROSOPHILA_2:1630893_AT dm
DROSGENOME1:142447_AT dm
CHICKEN:GGA.10268.1.S1_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) gga
HG-U133_PLUS_2:201570_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U133A:201570_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U133A_2:201570_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HU35KSUBB:RC_H74276_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U133A:201569_S_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:201569_S_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U133A_2:201569_S_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
U133_X3P:G7661541_3P_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
U133_X3P:G7661541_3P_A_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U95AV2:34845_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
U133_X3P:HS.4877.1.S1_3P_AT Sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
U133_X3P:HS.132895.0.A1_3P_AT Sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:230396_AT Sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U133B:230396_AT Sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:243239_AT Sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U133B:243239_AT Sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U95C:57320_AT Sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HG-U95D:78302_AT Sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
HU35KSUBD:RC_AA424675_AT Sorting and assembly machinery component 50 homolog (S. cerevisiae) hs
MOE430A:1428068_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) mm
MOUSE430A_2:1428068_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) mm
MOUSE430_2:1428068_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) mm
MOUSE430A_2:1455800_X_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) mm
MOE430A:1455800_X_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) mm
MOUSE430_2:1455800_X_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) mm
MU11KSUBA:AA050066_S_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) mm
MG-U74AV2:95690_AT sorting and assembly machinery component 50 homolog (S. cerevisiae) mm
RG-U34C:RC_AI232741_AT similar to Protein CGI-51 rn
RAE230A:1388380_AT similar to Protein CGI-51 rn
RAT230_2:1388380_AT similar to Protein CGI-51 rn
YEAST_2:1774480_AT Essential component of the Sorting and Assembly Machinery (SAM or Tob complex) of the mitochondrial outer membrane, which binds precursors of beta-barrel proteins and facilitates their outer membrane insertion; homologous to bacterial Omp85 Sc
Protein Similarities
Method ID Description E-Value
blast AAA19063 Gro-1 operon gene protein 3 [Caenorhabditis elegans] ref|NP_498119.1| Gro-1 OPeron gene family member (gop-3) [Caenorhabditis elegans] gb|AAL14110.1| GOP-3 [Caenorhabditis elegans] sp|P46576|SAM50_CAEEL SAM50-like protein gop-3 (Gro-1 operon protein 3) 0.0
blast CAE73672 Hypothetical protein CBG21181 [Caenorhabditis briggsae] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR000184 EMBL-EBI Bacterial surface antigen (D15) 1.1E-24
Pfam IPR000184 EMBL-EBI Bacterial surface antigen (D15) 5.2E-17
Sequence
Target Sequence 
>C. ELEGANS:187586_AT
agatgccgcattttcagttcgtgaacaagccggacacactttgaaattctcgttggagaa
tgctgtagctgttgatacaagagatagacctattcttgcaagtcgtggaattcttgctcg
ttttgctcaagagtacgcaggagtatttggtgatgcgtcatttgtgaagaatacattaga
tttacaggcagctgcccctcttccactcggtttcattcttgccgcctcattccaagcgaa
acatttgaaaggactcggagatcgagaagttcatattttggatagatgttatttgggtgg
acaacaggatgttcgaggatttggtctgaatactattggagttaaagcagataacagttg
tcttggaggaggtgcttcacttgctggtgtcgttcatttgtatcggccattgattccacc
aaatatgctatttgcacacgcattccttgcatctggaagtgttgcatcagttcattccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGCCGCATTTTCAGTTCGTGAA 431 65 663 Antisense
GCCGGACACACTTTGAAATTCTCGT 568 283 691 Antisense
TAGACCTATTCTTGCAAGTCGTGGA 495 651 747 Antisense
GTGGAATTCTTGCTCGTTTTGCTCA 184 491 767 Antisense
TTAGATTTACAGGCAGCTGCCCCTC 640 681 838 Antisense
TGCCGCCTCATTCCAAGCGAAACAT 529 585 882 Antisense
GTTGTCTTGGAGGAGGTGCTTCACT 615 437 1019 Antisense
CACTTGCTGGTGTCGTTCATTTGTA 600 195 1040 Antisense
TTGTATCGGCCATTGATTCCACCAA 46 709 1060 Antisense
TATTTGCACACGCATTCCTTGCATC 149 663 1091 Antisense
GAAGTGTTGCATCAGTTCATTCCAA 83 335 1118 Antisense
Sequence Source Affymetrix Proprietary Database