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[187585_at]

Description F21H12.3 /REP_DB=WormBase Gene ID /WP=CE01914 /TR=SW:Q09311 /GB=AAC46715.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 46.5
(-1.8)
A 		23.7
(-2.9)
A 		22.2
(-3)
A 		146.6
(3)
P 		124
B 48.9
(-0.4)
A 		31.1
(-3)
A 		49.5
(-0.3)
A 		71.5
(3)
P 		40
C 29.5
(-1.7)
A 		12.9
(-2.5)
A 		1.7
(-3)
A 		127.7
(3)
P 		126
avr 41.6
(-1.8) 		22.6
(-3) 		24.5
(-2.9) 		115.3
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 30.8
(1.5)
A 		13.4
(-1.3)
A 		39.7
(3)
A 		3
(-3)
A 		4.7
(-2.7)
A 		4.4
(-2.8)
A 		37
B 1.8
(-2.8)
A 		10.7
(-1.3)
A 		35.6
(3)
A 		0.9
(-3)
A 		20.9
(0.5)
A 		17.1
(-0.2)
A 		35
C 1
(-3)
A 		70.6
(3)
P 		4.9
(-2.7)
A 		8.7
(-2.3)
A 		1.7
(-2.9)
A 		1.6
(-2.9)
A 		70
avr 11.2
(-1.5) 		31.6
(3) 		26.7
(1.9) 		4.2
(-3) 		9.1
(-1.9) 		7.7
(-2.2) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 16.9
(1.3)
A 		5.2
(-3)
A 		5.8
(-2.8)
A 		21.5
(3)
P 		16
B 15.6
(3)
A 		7.7
(-3)
A 		11.5
(-0.1)
A 		15.2
(2.7)
P 		8
C 9.8
(-0.4)
A 		3.7
(-2.1)
A 		0.6
(-3)
A 		21.5
(3)
P 		21
avr 14.1
(0.7) 		5.5
(-3) 		6
(-2.8) 		19.4
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 5.7
(0.8)
A 		4.8
(0.1)
A 		8.6
(3)
A 		0.8
(-3)
A 		1.4
(-2.5)
A 		1.1
(-2.8)
A 		8
B 0.6
(-2.7)
A 		3.6
(-0.6)
A 		8.6
(3)
A 		0.2
(-3)
A 		8.5
(2.9)
A 		6.4
(1.4)
A 		8
C 0.4
(-3)
A 		21.5
(3)
P 		1.2
(-2.8)
A 		1.8
(-2.6)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		21
avr 2.2
(-2.1) 		10
(3) 		6.1
(0.4) 		0.9
(-3) 		3.5
(-1.3) 		2.7
(-1.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4719
Sequence Type Exemplar sequence
Representative Public ID F21H12.3 NCBI
Target Description F21H12.3 /REP_DB=WormBase Gene ID /WP=CE01914 /TR=SW:Q09311 /GB=AAC46715.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062816
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000015295 ENSEMBL cdna:SNAP chromosome:CEL140:II:6082874:6083509:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062816 1/11 Cross Hyb Matching Probes None
SNAP00000037287 1/11 Cross Hyb Matching Probes None
F21H12.3 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6082468-6083457(+) 78.04 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86843 Hypothetical protein ZK675.1 [Caenorhabditis elegans] ref|NP_495662.1| PaTChed family member (ptc-1) [Caenorhabditis elegans] sp|Q09614|PTC1_CAEEL Patched protein homolog 4.0E-32
blast CAE59824 Hypothetical protein CBG03294 [Caenorhabditis briggsae] 2.0E-29
blast CAE72420 Hypothetical protein CBG19582 [Caenorhabditis briggsae] 3.0E-10
Sequence
Target Sequence 
>C. ELEGANS:187585_AT
tcttcgctcttctaaaacacgccgagattatgaagcacatcgctagtttcaacgtttcag
ttcatggagtggactggtctctatccgacatctgcttcaaaccagctccaccatctgtcg
cagccgattctgccgcttcctcgcttggtgacgtcatcgatatgatatgcatttggatta
ctccaatagattatttttgcgatggatcgaaagcttttgagccgcatccatctctcccaa
aatcctcactccgatcacttgggacgtcgttgagtgcgctgtcagttgatgatatgattc
gctggtcagactttgggcaaatactgttttactacttgatcttttacaacgcatctcttt
tactacaggatctcttttactacggaatctcttttactaagaattccacatctagatctt
ttactacaattggatattttactacggaatctctattttatctctcttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGCTCTTCTAAAACACGCCGA 644 617 128 Antisense
GATCGAAAGCTTTTGAGCCGCATCC 593 417 332 Antisense
TCCGATCACTTGGGACGTCGTTGAG 561 593 377 Antisense
CGTTGAGTGCGCTGTCAGTTGATGA 621 247 395 Antisense
ACTACTTGATCTTTTACAACGCATC 164 101 458 Antisense
ACAACGCATCTCTTTTACTACAGGA 37 113 473 Antisense
TACTACAGGATCTCTTTTACTACGG 500 645 488 Antisense
TACTACGGAATCTCTTTTACTAAGA 174 645 505 Antisense
GAATTCCACATCTAGATCTTTTACT 128 325 528 Antisense
GGATATTTTACTACGGAATCTCTAT 143 509 559 Antisense
GAATCTCTATTTTATCTCTCTTCTT 364 329 574 Antisense
Sequence Source Affymetrix Proprietary Database