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[187583_s_at]

Description R13F6.10 /REP_DB=WormBase Gene ID /WP=CE25084 /TR=SW:Q21986 /GB=AAC47049.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 60      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 600.7
(1.6)
P 		527.8
(0.1)
P 		675.5
(3)
P 		364.8
(-3)
A 		311
B 606.8
(0.7)
P 		612.8
(0.7)
A 		769.2
(3)
P 		354.2
(-3)
M 		415
C 652
(3)
P 		625.6
(2.3)
A 		636.7
(2.6)
P 		437.2
(-3)
A 		215
avr 619.8
(1.6) 		588.7
(1) 		693.8
(3) 		385.4
(-3) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 558.8
(2.8)
A 		551.2
(2.6)
M 		356.4
(-3)
A 		391.1
(-2)
A 		372.4
(-2.5)
A 		565.8
(3)
A 		209
B 543.9
(1.2)
P 		582.9
(2.4)
A 		603
(3)
A 		486.3
(-0.5)
P 		415.5
(-2.7)
A 		404.1
(-3)
P 		199
C 509.2
(1.1)
P 		596.3
(3)
P 		510.5
(1.1)
A 		496.4
(0.8)
P 		321.7
(-3)
A 		563.2
(2.3)
M 		275
avr 537.3
(1.9) 		576.8
(3) 		490
(0.5) 		457.9
(-0.4) 		369.9
(-3) 		511
(1.1) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 218.7
(3)
P 		114.6
(-0.8)
P 		176.6
(1.5)
P 		53.4
(-3)
A 		165
B 193.5
(3)
P 		151.4
(0.9)
A 		178.2
(2.2)
P 		75.5
(-3)
M 		118
C 215.8
(2.8)
P 		179.9
(1.3)
A 		221.9
(3)
P 		73.7
(-3)
A 		148
avr 209.3
(3) 		148.6
(0.4) 		192.2
(2.3) 		67.5
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 103
(-1.7)
A 		196
(3)
M 		77.6
(-3)
A 		99.2
(-1.9)
A 		112.4
(-1.2)
A 		137.8
(0.1)
A 		118
B 189.2
(2.6)
P 		194
(3)
A 		146.4
(-1.4)
A 		128.8
(-3)
P 		168.8
(0.7)
A 		150.7
(-1)
P 		65
C 188.7
(3)
P 		182
(2.5)
P 		129.9
(-1)
A 		99.8
(-3)
P 		104.1
(-2.7)
A 		188.5
(3)
M 		89
avr 160.3
(0.8) 		190.7
(3) 		118
(-2.4) 		109.3
(-3) 		128.4
(-1.6) 		159
(0.7) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187583_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7678
Sequence Type Exemplar sequence
Representative Public ID R13F6.10 NCBI
Target Description R13F6.10 /REP_DB=WormBase Gene ID /WP=CE25084 /TR=SW:Q21986 /GB=AAC47049.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066093 NCBI Caenorhabditis elegans R13F6.10 (R13F6.10) mRNA, complete cds. 11/11 None
R13F6.10 ENSEMBL cdna:known chromosome:CEL140:III:6865154:6869354:-1 gene:R13F6.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6865445-6869314(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13F6.10
Entrez Gene 175956 Entrez gene
SwissProt Q21986 EMBL-EBI
WormBase CE31579 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.13942.1.S1_AT similar to CG4845-PA cfa
CANINE_2:CFAAFFX.13944.1.S1_S_AT similar to CG4845-PA cfa
DROSOPHILA_2:1638158_AT dm
DROSGENOME1:150239_AT dm
HG-U133_PLUS_2:227245_AT hypothetical protein FLJ13089 hs
HG-U133B:227245_AT hypothetical protein FLJ13089 hs
HU35KSUBA:RC_AA149585_AT hypothetical protein FLJ13089 hs
HU35KSUBC:RC_N35258_AT hypothetical protein FLJ13089 hs
HU35KSUBC:RC_AA286941_AT hypothetical protein FLJ13089 hs
U133_X3P:HS.314063.0.A1_3P_AT hypothetical protein FLJ13089 hs
U133_X3P:HS.285711.1.A1_3P_AT hypothetical protein FLJ13089 hs
U133_X3P:HS.285711.0.A1_3P_AT hypothetical protein FLJ13089 hs
HG-U133_PLUS_2:225888_AT hypothetical protein FLJ13089 hs
HG-U133B:225888_AT hypothetical protein FLJ13089 hs
HG-U133_PLUS_2:236816_AT hypothetical protein FLJ13089 hs
HG-U133B:236816_AT hypothetical protein FLJ13089 hs
HG-U95B:47493_AT hypothetical protein FLJ13089 hs
HG-U95C:63077_AT hypothetical protein FLJ13089 hs
HG-U95C:64382_AT hypothetical protein FLJ13089 hs
HG-U95E:85746_AT Hypothetical protein FLJ13089 hs
MG-U74BV2:104921_AT RIKEN cDNA C330023M02 gene mm
MG-U74BV2:115877_AT RIKEN cDNA C330023M02 gene mm
MG-U74BV2:163287_AT RIKEN cDNA C330023M02 gene mm
MG-U74BV2:162674_AT RIKEN cDNA C330023M02 gene mm
MOE430B:1433766_AT RIKEN cDNA C330023M02 gene mm
MOUSE430_2:1433766_AT RIKEN cDNA C330023M02 gene mm
MOE430B:1439027_AT RIKEN cDNA C330023M02 gene mm
MOUSE430_2:1439027_AT RIKEN cDNA C330023M02 gene mm
MOE430B:1445212_AT RIKEN cDNA C330023M02 gene, mRNA (cDNA clone IMAGE:4458590) mm
MOUSE430_2:1445212_AT RIKEN cDNA C330023M02 gene, mRNA (cDNA clone IMAGE:4458590) mm
RAE230B:1378980_AT similar to hypothetical protein FLJ13089 (predicted) rn
RAT230_2:1378980_AT similar to hypothetical protein FLJ13089 (predicted) rn
RAE230B:1383446_AT similar to hypothetical protein FLJ13089 (predicted) rn
RAT230_2:1383446_AT similar to hypothetical protein FLJ13089 (predicted) rn
RAE230B:1384553_AT similar to hypothetical protein FLJ13089 (predicted) rn
RAT230_2:1384553_AT similar to hypothetical protein FLJ13089 (predicted) rn
RAE230B:1385066_A_AT Similar to hypothetical protein FLJ13089 (predicted) rn
RAT230_2:1385066_A_AT Similar to hypothetical protein FLJ13089 (predicted) rn
RAE230B:1395524_AT Similar to hypothetical protein FLJ13089 (predicted) rn
RAT230_2:1395524_AT Similar to hypothetical protein FLJ13089 (predicted) rn
RG-U34B:RC_AI044779_AT Similar to hypothetical protein FLJ13089 (predicted) rn
RG-U34C:RC_AI178736_AT Similar to hypothetical protein FLJ13089 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_498494 R13F6.10 [Caenorhabditis elegans] gb|AAC47049.3| Hypothetical protein R13F6.10 [Caenorhabditis elegans] sp|Q21986|YNQA_CAEEL Hypothetical protein R13F6.10 in chromosome III 0.0
blast T16751 hypothetical protein R13F6.10 - Caenorhabditis elegans 0.0
blast CAE70097 Hypothetical protein CBG16540 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.ArsR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; ArsR-like transcriptional regulators 6.09999990463257
Sequence
Target Sequence 
>C. ELEGANS:187583_S_AT
tactggagtatctggaggccgctgtcaaacttgtcgacattttagattctggagagcacc
ccgaaaagtctcttgttggaactagaacggaaatggcaactaaacttattaaactcatcg
agattccgccaaaacgtaaggaaggggagaagctacctccgttttggattgtagatccaa
taatcaagtcatcaagagcacttcaaacaattgctgctatacaagttgtgctccggctca
ttgagaaagttgtgctgaaattggtaaaaaatgttccaacagctgttcccgaacccgttg
ggaaaggaaaaggaaagaaagacaagaaagctgctgaagaggcaatgacaaaagctctcg
acgaatgcaaggctgtcgtctttctcgaacatataagagcgatgcacgttgaactccgat
ccgctggaaacttccttcatacctatcttggacaaatgctggcacttgaagatgagtaca
tcccgagtaacattggagaagatcttggaggggctaaagctgcattagaaggtatgcata
atccagttgcttctcgccttcaaagatcttttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGGAGTATCTGGAGGCCGCTGT 506 645 2222 Antisense
AGGCCGCTGTCAAACTTGTCGACAT 573 53 2237 Antisense
GAGCACCCCGAAAAGTCTCTTGTTG 577 387 2275 Antisense
AACTCATCGAGATTCCGCCAAAACG 239 141 2333 Antisense
GAGAAGCTACCTCCGTTTTGGATTG 551 391 2368 Antisense
AGTTGTGCTCCGGCTCATTGAGAAA 298 65 2445 Antisense
AATGTTCCAACAGCTGTTCCCGAAC 586 163 2491 Antisense
TGAACTCCGATCCGCTGGAAACTTC 520 553 2631 Antisense
AACTTCCTTCATACCTATCTTGGAC 544 137 2650 Antisense
ATGCATAATCCAGTTGCTTCTCGCC 581 43 2755 Antisense
CTTCTCGCCTTCAAAGATCTTTTCT 378 221 2771 Antisense
Sequence Source Affymetrix Proprietary Database