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[187582_at]

Description ZK1320.10 /REP_DB=WormBase Gene ID /WP=CE01699 /TR=SW:Q09367 /GB=CAA87048.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 57      6grp_total > 46      4grp_total > 12      6grp_cgc > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5502
1 2 3 4 range
A 3274.1
(-0.7)
P 		2171
(-2.4)
P 		1755.7
(-3)
P 		5730.3
(3)
P 		3975
B 3086.2
(-1.4)
P 		2079.3
(-2.5)
P 		1604.5
(-3)
P 		7106.6
(3)
P 		5502
C 2514.3
(-1.8)
P 		2049.2
(-2.5)
P 		1682
(-3)
P 		5691
(3)
P 		4009
avr 2958.2
(-1.3) 		2099.8
(-2.4) 		1680.7
(-3) 		6176
(3) 		4495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1121
1 2 3 4 5 6 range
A 2606.6
(-0.8)
P 		2878.1
(3)
P 		2456.4
(-2.9)
P 		2497
(-2.3)
P 		2446.3
(-3)
P 		2628.6
(-0.5)
P 		432
B 2845.8
(-0.2)
P 		3289.4
(3)
P 		2990.8
(0.8)
P 		2470.1
(-3)
P 		2469.9
(-3)
P 		2759.6
(-0.9)
P 		820
C 2621.7
(0.1)
P 		2913.3
(2)
P 		2608.7
(-0)
P 		3055.2
(3)
P 		2168
(-3)
P 		2778.4
(1.1)
P 		887
avr 2691.4
(-0) 		3026.9
(3) 		2685.3
(-0.1) 		2674.1
(-0.2) 		2361.4
(-3) 		2722.2
(0.3) 		666
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1143
1 2 3 4 range
A 1192.1
(3)
P 		471.3
(-2.9)
P 		459
(-3)
P 		838.8
(0.1)
P 		733
B 984.2
(0.2)
P 		513.5
(-2.3)
P 		371.8
(-3)
P 		1514.4
(3)
P 		1143
C 832.3
(1)
P 		589.2
(-3)
P 		586.2
(-3)
P 		959.6
(3)
P 		373
avr 1002.9
(2) 		524.7
(-2.5) 		472.3
(-3) 		1104.3
(3) 		632

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 614
1 2 3 4 5 6 range
A 480.5
(-3)
P 		1023.6
(3)
P 		534.9
(-2.4)
P 		633.3
(-1.3)
P 		738.2
(-0.2)
P 		640
(-1.2)
P 		543
B 990.2
(1.6)
P 		1094.9
(3)
P 		726.3
(-2)
P 		654.2
(-3)
P 		1003.5
(1.8)
P 		1029.1
(2.1)
P 		441
C 971.8
(3)
P 		888.9
(1.6)
P 		664
(-2.2)
P 		614.4
(-3)
P 		701.5
(-1.5)
P 		930.1
(2.3)
P 		357
avr 814.2
(-0.1) 		1002.5
(3) 		641.7
(-2.9) 		634
(-3) 		814.4
(-0.1) 		866.4
(0.8) 		369
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3668
Sequence Type Exemplar sequence
Representative Public ID ZK1320.10 NCBI
Target Description ZK1320.10 /REP_DB=WormBase Gene ID /WP=CE01699 /TR=SW:Q09367 /GB=CAA87048.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063690 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-11) (nlp-11) mRNA, complete cds. 11/11 None
ZK1320.10.1 ENSEMBL cdna:known chromosome:CEL140:II:9689572:9691850:-1 gene:ZK1320.10 11/11 None
ZK1320.10.2 ENSEMBL cdna:known chromosome:CEL140:II:9689606:9691852:-1 gene:ZK1320.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9689752-9691794(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nlp-11
Ensembl ZK1320.10
Entrez Gene 191566 Entrez gene
SwissProt Q09367 EMBL-EBI
WormBase CE01699 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87048 Hypothetical protein ZK1320.10 [Caenorhabditis elegans] ref|NP_496091.1| Neuropeptide-Like Protein family member (nlp-11) [Caenorhabditis elegans] sp|Q09367|YS2A_CAEEL Hypothetical protein ZK1320.10 in chromosome II 9.0E-71
blast CAE57977 Hypothetical protein CBG01038 [Caenorhabditis briggsae] 1.0E-46
Sequence
Target Sequence 
>C. ELEGANS:187582_AT
gcacattggcacttgtttcgttggcgatttttggaattgcagttgtctgtgctgcaccaa
aacctgcaacagttcctgttgcaaatgaagaagactatttggctgctctttatggatttg
aggccccaggatcacaattcaagggtgcaccactccaatcaaaacgacatatttcaccat
catacgacgtagaaatcgacgctggaaacatgagaaatttgttggatattggcaagagaa
gtgctccaatggcaagcgactatggaaatcagttccagatgtacaaccgtctgatcgacg
ctggaaagaagaagagaagccctgcaatttctccagcttaccaatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACATTGGCACTTGTTTCGTTGGC 487 315 20 Antisense
GTTGTCTGTGCTGCACCAAAACCTG 417 437 61 Antisense
CCAAAACCTGCAACAGTTCCTGTTG 562 273 76 Antisense
GACTATTTGGCTGCTCTTTATGGAT 93 373 112 Antisense
GATTTGAGGCCCCAGGATCACAATT 36 427 134 Antisense
AATTCAAGGGTGCACCACTCCAATC 432 175 155 Antisense
ACGACATATTTCACCATCATACGAC 361 93 183 Antisense
GAAGTGCTCCAATGGCAAGCGACTA 476 335 257 Antisense
GTACAACCGTCTGATCGACGCTGGA 326 459 300 Antisense
GAAGAGAAGCCCTGCAATTTCTCCA 534 337 330 Antisense
GCAATTTCTCCAGCTTACCAATTTG 306 323 343 Antisense
Sequence Source Affymetrix Proprietary Database