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[187581_at]

Description B0280.10 /REP_DB=WormBase Gene ID /WP=CE00817 /TR=SW:P42001 /GB=AAA19088.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      4grp_high_8_8 > 43      6grp_total > 77      4grp_total > 53      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 152.3
(-2.7)
P 		236.1
(3)
P 		187.6
(-0.3)
P 		147.7
(-3)
P 		88
B 244.9
(3)
P 		157.3
(-1.5)
P 		177.3
(-0.4)
P 		126.8
(-3)
P 		118
C 197.7
(3)
P 		128.5
(-3)
M 		138.7
(-2.1)
P 		137.5
(-2.2)
P 		69
avr 198.3
(3) 		174
(0.6) 		167.9
(0) 		137.3
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 450
1 2 3 4 5 6 range
A 225.6
(-1.7)
M 		162.6
(-2.8)
P 		220.1
(-1.8)
P 		149.8
(-3)
P 		230.3
(-1.7)
P 		509.2
(3)
P 		359
B 166.7
(-3)
P 		163.9
(-3)
P 		228.6
(-2.1)
P 		340.4
(-0.5)
P 		315.8
(-0.8)
P 		583.1
(3)
P 		419
C 162.7
(-2.4)
P 		166.6
(-2.3)
P 		133.5
(-3)
P 		221.9
(-1.2)
P 		182.6
(-2)
P 		432.7
(3)
P 		299
avr 185
(-2.6) 		164.4
(-3) 		194.1
(-2.5) 		237.4
(-1.7) 		242.9
(-1.6) 		508.3
(3) 		344
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 55.5
(3)
P 		51.3
(2.3)
P 		49
(1.8)
P 		21.6
(-3)
P 		34
B 78.1
(3)
P 		38.8
(-1.6)
P 		41.1
(-1.3)
P 		27
(-3)
P 		51
C 65.4
(3)
P 		36.9
(-1.1)
M 		48.3
(0.6)
P 		23.2
(-3)
P 		42
avr 66.3
(3) 		42.3
(-0.4) 		46.1
(0.1) 		23.9
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 41.6
(-2.7)
M 		57.8
(-1.6)
P 		47.9
(-2.3)
P 		38
(-3)
P 		69.5
(-0.8)
P 		124
(3)
P 		86
B 58
(-2.9)
P 		54.6
(-3)
P 		55.5
(-3)
P 		90.2
(-1.7)
P 		128.3
(-0.3)
P 		217.4
(3)
P 		163
C 60.3
(-1.6)
P 		50.8
(-2.1)
P 		34
(-3)
P 		44.6
(-2.4)
P 		59.1
(-1.6)
P 		144.9
(3)
P 		111
avr 53.3
(-2.6) 		54.4
(-2.6) 		45.8
(-3) 		57.6
(-2.4) 		85.6
(-0.9) 		162.1
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7260
Sequence Type Exemplar sequence
Representative Public ID B0280.10 NCBI
Target Description B0280.10 /REP_DB=WormBase Gene ID /WP=CE00817 /TR=SW:P42001 /GB=AAA19088.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066157 NCBI Caenorhabditis elegans B0280.10 (B0280.10) mRNA, complete cds. 11/11 None
SNAP00000041614 ENSEMBL cdna:SNAP chromosome:CEL140:III:7132059:7133589:-1 11/11 None
GENEFINDER00000041624 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7132059:7133589:-1 11/11 None
B0280.10 ENSEMBL cdna:known chromosome:CEL140:III:7132059:7133589:-1 gene:B0280.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7132056-7133587(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0280.10
Entrez Gene 181894 Entrez gene
SwissProt P42001 EMBL-EBI
WormBase CE29533 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA19088 Hypothetical protein B0280.10 [Caenorhabditis elegans] ref|NP_498558.1| B0280.10 [Caenorhabditis elegans] sp|P42001|YKC0_CAEEL Hypothetical protein B0280.10 in chromosome III 0.0
blast T15304 hypothetical protein B0280.10 - Caenorhabditis elegans 1.0E-81
blast CAE70139 Hypothetical protein CBG16601 [Caenorhabditis briggsae] 1.0E-47
Sequence
Target Sequence 
>C. ELEGANS:187581_AT
ggttgtcatcttatagcttggtctcaatccggaaaagtggataatcctgttattatcagc
tcaagatcatggactaaaagcgatgaagacactccagacgctccgcaaactaggaaaatc
aagaagaaagtcagtttactagaaattgatgattcttggttcaacgatgagaattcggaa
caatttgtgcaatatgtattgaactgtacaacttgtcatgtcgaatacaatcacgttgag
tatgcacaaaacaatatcccaacaaattgtcggttctgtcaagaagcaatggaaagtttc
cacgctgcatttcggattcgtatttctattgaaacttatggagtatttcttacaatccct
ttggaattgattaaaacggagctggacatttgtgaagattgggattctgaaagcaatatc
gtagaagaggaagagaaagttactagattcaaaaaaaatattcaggaaaaggttcgcgat
gcgtcaattgtgcatataaaagggttggtagtgttccgttcacttgaattgaagtcaatt
gatattcatctctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGTCATCTTATAGCTTGGTCTC 41 509 277 Antisense
AGCTTGGTCTCAATCCGGAAAAGTG 124 65 291 Antisense
GCGATGAAGACACTCCAGACGCTCC 205 291 356 Antisense
TCCAGACGCTCCGCAAACTAGGAAA 103 591 369 Antisense
ATCCCAACAAATTGTCGGTTCTGTC 670 37 532 Antisense
AAGTTTCCACGCTGCATTTCGGATT 293 157 570 Antisense
GCTGCATTTCGGATTCGTATTTCTA 463 297 580 Antisense
GAGTATTTCTTACAATCCCTTTGGA 442 397 617 Antisense
GGTTCGCGATGCGTCAATTGTGCAT 310 507 747 Antisense
GGTTGGTAGTGTTCCGTTCACTTGA 516 503 779 Antisense
GAAGTCAATTGATATTCATCTCTCG 300 335 807 Antisense
Sequence Source Affymetrix Proprietary Database