[Home] | [Total List]

[187580_s_at]

Description K09G1.1 /REP_DB=WormBase Gene ID /WP=CE12040 /CHR=5 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XVL1 protein_id:CAB03197.1
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 24      6grp_total > 32      4grp_total > 58      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3635
1 2 3 4 range
A 2371.6
(-0.5)
P 		4332.7
(3)
P 		4093
(2.6)
P 		956.1
(-3)
P 		3377
B 2261.8
(-0.9)
P 		4400.5
(2.7)
P 		4590.7
(3)
P 		1016.8
(-3)
P 		3574
C 2763.2
(0.1)
P 		4238.7
(2.6)
P 		4456.6
(3)
P 		982.1
(-3)
P 		3475
avr 2465.5
(-0.4) 		4324
(2.9) 		4380.1
(3) 		985
(-3) 		3395

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3106
1 2 3 4 5 6 range
A 3875.9
(3)
P 		3848.6
(2.9)
P 		3741.3
(2.6)
P 		3582.1
(2.1)
P 		2839.9
(-0.1)
P 		1893.5
(-3)
P 		1982
B 3767.2
(0.6)
P 		3403
(-0.2)
P 		4999.6
(3)
P 		3389.5
(-0.2)
P 		2788.5
(-1.4)
P 		1980.8
(-3)
P 		3019
C 3356.7
(0.8)
P 		3626.8
(1.7)
P 		4025.3
(3)
P 		3455.8
(1.2)
P 		2232.2
(-2.8)
P 		2166.7
(-3)
P 		1859
avr 3666.6
(1.4) 		3626.1
(1.3) 		4255.4
(3) 		3475.8
(0.9) 		2620.2
(-1.4) 		2013.7
(-3) 		2242
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1413
1 2 3 4 range
A 863.5
(1.7)
P 		940.5
(2.2)
P 		1070
(3)
P 		140
(-3)
P 		930
B 721.3
(0.5)
P 		1086.8
(3)
P 		1063.8
(2.8)
P 		216.7
(-3)
P 		870
C 914.7
(0.2)
P 		1218.7
(1.6)
P 		1553.3
(3)
P 		165.6
(-3)
P 		1388
avr 833.2
(0.7) 		1082
(2.2) 		1229
(3) 		174.1
(-3) 		1055

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 908
1 2 3 4 5 6 range
A 714.5
(-1.3)
P 		1368.8
(3)
P 		814.8
(-0.7)
P 		908.5
(-0)
P 		857
(-0.4)
P 		461
(-3)
P 		908
B 1310.8
(3)
P 		1132.7
(1.1)
P 		1214.1
(2)
P 		897.8
(-1.3)
P 		1133
(1.1)
P 		738.6
(-3)
P 		572
C 1244.2
(3)
P 		1106.7
(1.5)
P 		1024.5
(0.6)
P 		695
(-3)
P 		722.3
(-2.7)
P 		725.3
(-2.7)
P 		549
avr 1089.8
(1.8) 		1202.7
(3) 		1017.8
(1) 		833.8
(-0.9) 		904.1
(-0.2) 		641.6
(-3) 		561
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187580_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11433
Sequence Type Exemplar sequence
Representative Public ID K09G1.1 NCBI
Target Description K09G1.1 /REP_DB=WormBase Gene ID /WP=CE12040 /CHR=5 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XVL1 protein_id:CAB03197.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073073(9), NM_073074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073073 NCBI Caenorhabditis elegans K09G1.1b (K09G1.1) mRNA, complete cds. 9/11 None
NM_073074 NCBI Caenorhabditis elegans K09G1.1a (K09G1.1) mRNA, complete cds. 11/11 None
SNAP00000020030 ENSEMBL cdna:SNAP chromosome:CEL140:V:9591751:9592818:1 11/11 None
GENEFINDER00000020037 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9591754:9592818:1 11/11 None
K09G1.1b ENSEMBL cdna:known chromosome:CEL140:V:9588768:9593106:1 gene:K09G1.1 9/11 None
K09G1.1a ENSEMBL cdna:known chromosome:CEL140:V:9591743:9592818:1 gene:K09G1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9591753-9592818(+) 100.0 100.0
Public Domain and Genome References
Ensembl K09G1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03197 Hypothetical protein K09G1.1a [Caenorhabditis elegans] ref|NP_505475.1| K09G1.1a [Caenorhabditis elegans] 1.0E-114
blast CAC42330 Hypothetical protein K09G1.1b [Caenorhabditis elegans] ref|NP_505474.1| K09G1.1b [Caenorhabditis elegans] 1.0E-100
blast CAC42330 Hypothetical protein K09G1.1b [Caenorhabditis elegans] ref|NP_505474.1| K09G1.1b [Caenorhabditis elegans] 2.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR008253 EMBL-EBI Marvel 2.4E-29
Pfam IPR008253 EMBL-EBI Marvel 2.4E-29
Pfam IPR008253 EMBL-EBI Marvel 2.4E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505474.1 4 50-72,87-106,119-141,156-173
NP_505475.1 4 61-83,98-117,130-152,167-184
K09G1.1b 4 50-72,87-106,119-141,156-173
K09G1.1a 4 61-83,98-117,130-152,167-184
SNAP00000020030 4 62-84,99-118,131-153,168-185
GENEFINDER00000020037 4 61-83,98-117,130-152,167-184
Sequence
Target Sequence 
>C. ELEGANS:187580_S_AT
gtaccccattctgatgacatcacaagacctgattcttctccaaagaaggagaaaaagaag
cttcaattccatatggctaataaggtgaaaatcattccaacaaaccgtcaaggacaactc
aacactggttacttggcaacacttgccggagttttgaagattgctgaaattgttctttct
ttcatcgccttcatccttgccatctgtgctgatcgtcgaacaacaacagccgcctggact
gagcatatctcatttgaaactcttcttattgtttctgcacttcttcttggttatgtagtc
ttcccacatcttaccatcaaagatgaagccacgagagagggacttattgttgtggagctg
atcttctatggagtcaacactcttttgtacttcatctcaatctggttaatggttcatttg
tctgctagctggggaacggatggaagaggagctgctattatgactgctgtgatctgcgtc
gccttaacagtattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCCCATTCTGATGACATCACAA 81 459 61 Antisense
ATCACAAGACCTGATTCTTCTCCAA 448 27 79 Antisense
GACAACTCAACACTGGTTACTTGGC 239 365 173 Antisense
CCATCTGTGCTGATCGTCGAACAAC 152 271 260 Antisense
ACTCTTCTTATTGTTTCTGCACTTC 277 101 319 Antisense
TTCTGCACTTCTTCTTGGTTATGTA 152 695 333 Antisense
GTTATGTAGTCTTCCCACATCTTAC 339 443 350 Antisense
GAGTCAACACTCTTTTGTACTTCAT 650 399 431 Antisense
GGTTCATTTGTCTGCTAGCTGGGGA 329 507 471 Antisense
TTATGACTGCTGTGATCTGCGTCGC 457 679 518 Antisense
GATCTGCGTCGCCTTAACAGTATTG 105 415 531 Antisense
Sequence Source Affymetrix Proprietary Database