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[187579_at]

Description F37A4.4 /REP_DB=WormBase Gene ID /WP=CE24953 /TR=SW:P41882 /GB=AAA50632.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 4
(-3)
A 		14.1
(-0.3)
A 		11.6
(-0.9)
A 		26.1
(3)
A 		22
B 20.1
(-1.9)
A 		50.2
(3)
A 		13.4
(-3)
A 		35.2
(0.6)
A 		37
C 35.3
(3)
A 		22.6
(-1.3)
A 		30.3
(1.3)
A 		17.4
(-3)
A 		18
avr 19.8
(-2.2) 		29
(3) 		18.4
(-3) 		26.2
(1.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 3.1
(-3)
A 		25.8
(-2.3)
A 		9
(-2.8)
A 		65.7
(-0.9)
A 		47.6
(-1.5)
A 		186.3
(3)
P 		183
B 23.4
(-2.4)
A 		8.4
(-3)
A 		34.5
(-2)
A 		62.7
(-0.8)
A 		72.7
(-0.4)
A 		158.8
(3)
P 		150
C 38.5
(-2)
A 		14
(-3)
A 		44.5
(-1.8)
A 		25.3
(-2.5)
A 		53.2
(-1.4)
A 		162.9
(3)
P 		149
avr 21.7
(-2.8) 		16.1
(-3) 		29.3
(-2.5) 		51.2
(-1.6) 		57.8
(-1.4) 		169.3
(3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.5
(-3)
A 		3.1
(1.2)
A 		3
(0.9)
A 		3.8
(3)
A 		2
B 6.4
(-0.9)
A 		12.4
(3)
A 		3.1
(-3)
A 		7.5
(-0.2)
A 		9
C 11.7
(3)
A 		6.5
(-0.5)
A 		10.5
(2.2)
A 		2.9
(-3)
A 		9
avr 6.5
(1.2) 		7.3
(3) 		5.5
(-1.2) 		4.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 0.6
(-3)
A 		9.2
(-1.8)
A 		2
(-2.8)
A 		16.7
(-0.8)
A 		14.4
(-1.2)
A 		45.4
(3)
P 		45
B 8.2
(-2.4)
A 		2.8
(-3)
A 		8.4
(-2.4)
A 		16.6
(-1.5)
A 		29.5
(-0.2)
A 		59.2
(3)
P 		56
C 14.3
(-1.8)
A 		4.3
(-3)
A 		11.3
(-2.2)
A 		5.1
(-2.9)
A 		17.2
(-1.5)
A 		54.5
(3)
P 		50
avr 7.7
(-2.7) 		5.4
(-3) 		7.2
(-2.8) 		12.8
(-2.1) 		20.4
(-1.1) 		53
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7141
Sequence Type Exemplar sequence
Representative Public ID F37A4.4 NCBI
Target Description F37A4.4 /REP_DB=WormBase Gene ID /WP=CE24953 /TR=SW:P41882 /GB=AAA50632.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066070 NCBI Caenorhabditis elegans F37A4.4 (F37A4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000044176 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6713573:6717918:1 11/11 None
SNAP00000044171 ENSEMBL cdna:SNAP chromosome:CEL140:III:6713638:6717918:1 11/11 None
F37A4.4 ENSEMBL cdna:known chromosome:CEL140:III:6713516:6717954:1 gene:F37A4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6713636-6717917(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37A4.4
Entrez Gene 175945 Entrez gene
SwissProt P41882 EMBL-EBI
WormBase CE24953 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9401 phosphoenolpyruvate-dependent sugar phosphotransferase system inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50632 Hypothetical protein F37A4.4 [Caenorhabditis elegans] ref|NP_498471.1| F37A4.4 [Caenorhabditis elegans] sp|P41882|YPT4_CAEEL Hypothetical protein F37A4.4 in chromosome III 0.0
blast S44641 hypothetical protein F37A4.4 - Caenorhabditis elegans 0.0
blast CAE70118 Hypothetical protein CBG16570 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.9E-28
Pfam IPR001357 EMBL-EBI BRCT 2.2E-12
Pfam IPR001357 EMBL-EBI BRCT 9.3E-5
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-8
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.9E-28
Pfam IPR001357 EMBL-EBI BRCT 2.2E-12
Pfam IPR001357 EMBL-EBI BRCT 9.3E-5
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498471.1 1 765-787
F37A4.4 1 765-787
GENEFINDER00000044176 1 749-771
SNAP00000044171 1 765-787
Sequence
Target Sequence 
>C. ELEGANS:187579_AT
gtttcaatcgattacctccgacgaagcaatgatcaccaccactcatgttgtcgtgaaaac
tactgaagacggaatcctcgaaacggatgatttgaaccttttaatttggatcttccacgg
atcaataattgttagggatacgtggatggttgattgcctcagagacgaaaagttgattga
aaaagactgtgactatcttgtcgaaaaagtgaaatacaagggaatcatctacgatacagt
aacccaatggtccaatgcaatggcaaaagcaactactccattcttgtacggtgttcatgt
ggctctctgtatgaaaaattgcccatatttggcaagtctgactgcaatcatccaaggcca
aggaggaactatgctggataagttccctgacaaagatgcctttaacaaaggatcccatcc
ctaccttcacaaaaatcttggaccgatctttcttcttcacgatggaactggcgacttgga
tctctacagatctgacccagacaaaatgttcacccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCAATCGATTACCTCCGACGAA 651 449 2889 Antisense
CTCCGACGAAGCAATGATCACCACC 288 235 2904 Antisense
ATCACCACCACTCATGTTGTCGTGA 532 27 2920 Antisense
GTGGATGGTTGATTGCCTCAGAGAC 44 491 3030 Antisense
AAGCAACTACTCCATTCTTGTACGG 161 151 3155 Antisense
GGCAAGTCTGACTGCAATCATCCAA 563 533 3219 Antisense
TTAACAAAGGATCCCATCCCTACCT 83 679 3290 Antisense
AAATCTTGGACCGATCTTTCTTCTT 46 119 3321 Antisense
ATGGAACTGGCGACTTGGATCTCTA 118 53 3350 Antisense
GATCTCTACAGATCTGACCCAGACA 396 419 3367 Antisense
GACCCAGACAAAATGTTCACCCTTT 661 381 3382 Antisense
Sequence Source Affymetrix Proprietary Database