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[187578_at]

Description R02F2.2 /REP_DB=WormBase Gene ID /WP=CE00687 /TR=SW:Q21653 /GB=AAA50719.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_high_8_8 > 46      6grp_highest_nonorm > 41      6grp_total > 08      4grp_total > 50      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 438
1 2 3 4 range
A 734.4
(-0.2)
P 		816.2
(3)
P 		795.4
(2.2)
P 		661.9
(-3)
M 		154
B 756.1
(3)
P 		638.4
(-3)
P 		729
(1.6)
P 		709.4
(0.6)
P 		118
C 571.5
(-2.9)
P 		1003.7
(3)
P 		822.3
(0.5)
P 		565.7
(-3)
A 		438
avr 687.3
(-1.6) 		819.4
(3) 		782.2
(1.7) 		645.7
(-3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 725
1 2 3 4 5 6 range
A 1160.8
(3)
P 		466.5
(-2.7)
P 		645.2
(-1.3)
P 		630.2
(-1.4)
P 		672.6
(-1)
P 		435.9
(-3)
P 		725
B 967.5
(3)
P 		865.7
(1.7)
P 		638.1
(-1.3)
P 		911
(2.3)
P 		503.4
(-3)
P 		644.2
(-1.2)
P 		464
C 649
(-1.1)
P 		869.4
(2)
P 		515.4
(-3)
P 		939.1
(3)
P 		594.7
(-1.9)
P 		642.9
(-1.2)
P 		424
avr 925.8
(3) 		733.9
(-0.3) 		599.6
(-2.6) 		826.8
(1.3) 		590.2
(-2.7) 		574.3
(-3) 		352
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 267.4
(3)
P 		177.2
(-0.2)
P 		207.9
(0.9)
P 		96.9
(-3)
M 		171
B 241.1
(3)
P 		157.7
(-2.6)
P 		168.9
(-1.8)
P 		151.2
(-3)
P 		90
C 189.2
(-0.1)
P 		288.6
(3)
P 		286.6
(2.9)
P 		95.4
(-3)
A 		193
avr 232.6
(3) 		207.8
(1.7) 		221.1
(2.4) 		114.5
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 214
(3)
P 		165.9
(0.3)
P 		140.5
(-1.1)
P 		159.8
(-0)
P 		203
(2.4)
P 		106.1
(-3)
P 		108
B 336.6
(3)
P 		288.2
(1.4)
P 		155
(-3)
P 		241.3
(-0.1)
P 		204.5
(-1.4)
P 		240.2
(-0.2)
P 		182
C 240.5
(1.9)
P 		265.3
(3)
P 		131.2
(-3)
P 		188.9
(-0.4)
P 		192.4
(-0.3)
P 		215.2
(0.8)
P 		134
avr 263.7
(3) 		239.8
(1.8) 		142.2
(-3) 		196.7
(-0.3) 		200
(-0.1) 		187.2
(-0.8) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6585
Sequence Type Exemplar sequence
Representative Public ID R02F2.2 NCBI
Target Description R02F2.2 /REP_DB=WormBase Gene ID /WP=CE00687 /TR=SW:Q21653 /GB=AAA50719.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065771, NM_065773
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000033077 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5496360:5498834:1 None
SNAP00000033072 ENSEMBL cdna:SNAP chromosome:CEL140:III:5496402:5498399:1 None
SNAP00000033073 ENSEMBL cdna:SNAP chromosome:CEL140:III:5499188:5499835:1 None
NM_065773 NCBI Caenorhabditis elegans R02F2.9 (R02F2.9) mRNA, complete cds. None
GENEFINDER00000033080 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5499188:5499835:1 None
R02F2.2 ENSEMBL cdna:known chromosome:CEL140:III:5487478:5498899:1 gene:R02F2.2 A 
NM_065771 NCBI Caenorhabditis elegans R02F2.2 (R02F2.2) mRNA, complete cds. A 
R02F2.9 ENSEMBL cdna:known chromosome:CEL140:III:5499188:5499897:1 gene:R02F2.9 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5496370-5499834(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl R02F2.2
R02F2.9
Entrez Gene 175756 Entrez gene
259963 Entrez gene
SwissProt Q21653 EMBL-EBI
Q95QC2 EMBL-EBI
WormBase CE31046 Wormbase
CE29441 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639954_AT dm
DROSGENOME1:153009_AT dm
CHICKEN:GGA.11598.1.S1_A_AT similar to immature colon carcinoma transcript 1 gga
HG-U133_PLUS_2:204868_AT immature colon carcinoma transcript 1 hs
HG-U133A:204868_AT immature colon carcinoma transcript 1 hs
HG-FOCUS:204868_AT immature colon carcinoma transcript 1 hs
HG-U133A_2:204868_AT immature colon carcinoma transcript 1 hs
HG-U95AV2:40758_AT immature colon carcinoma transcript 1 hs
HUGENEFL:X81788_AT immature colon carcinoma transcript 1 hs
U133_X3P:G4557656_3P_AT immature colon carcinoma transcript 1 hs
MOUSE430_2:1444276_AT immature colon carcinoma transcript 1 mm
MOE430B:1444276_AT immature colon carcinoma transcript 1 mm
MOUSE430_2:1460308_A_AT immature colon carcinoma transcript 1 mm
MOE430A:1460308_A_AT immature colon carcinoma transcript 1 mm
MOUSE430A_2:1460308_A_AT immature colon carcinoma transcript 1 mm
MG-U74AV2:99150_AT immature colon carcinoma transcript 1 mm
MU19KSUBB:TC32736_AT Immature colon carcinoma transcript 1, mRNA (cDNA clone MGC:41300 IMAGE:2938122) mm
MU19KSUBB:TC34651_AT Immature colon carcinoma transcript 1, mRNA (cDNA clone MGC:41300 IMAGE:2938122) mm
MU19KSUBB:TC34651_G_AT Immature colon carcinoma transcript 1, mRNA (cDNA clone MGC:41300 IMAGE:2938122) mm
RG-U34A:RC_AA892507_AT immature colon carcinoma transcript 1 (predicted) rn
RAE230A:1374443_AT immature colon carcinoma transcript 1 (predicted) rn
RAT230_2:1374443_AT immature colon carcinoma transcript 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5085 guanyl-nucleotide exchange factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL06044 Hypothetical protein R02F2.2 [Caenorhabditis elegans] ref|NP_498172.2| R02F2.2 [Caenorhabditis elegans] sp|Q21653|YNG2_CAEEL Hypothetical protein R02F2.2 in chromosome III precursor 0.0
blast T16657 hypothetical protein R02F2.3 - Caenorhabditis elegans 0.0
blast CAE61372 Hypothetical protein CBG05214 [Caenorhabditis briggsae] 0.0
blast CAE61364 Hypothetical protein CBG05206 [Caenorhabditis briggsae] 0.0
blast CAE61364 Hypothetical protein CBG05206 [Caenorhabditis briggsae] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR000219 EMBL-EBI DH domain 1.5E-34
Sequence
Target Sequence 
>C. ELEGANS:187578_AT
ggataccgggaagtttcagccaccggtggaaatcctcccctcttcggatgtgatcaccct
aataatgctgcgaaatctctcatcttttgtagtaaaatcgactcgccacattcaagcatc
ttcctccgcaacattcaatggtgtgattccgactgaaaagatcgaaaaacgatacacgtt
gagcagtggaccaggcggacaaaatgtgcagaagaacgccacaaaagtcgaaattcgatt
caaagtgagcgaagctgaatggttgtcagagtcactgagagatttggtcgaggagaagtt
gtcacatagaattaataccgccggagagctcatcattgacagcgatcgtacccgagaacg
tcatctaaatgtggctgattgtttcgacaaacttcgttccgccatctatgcaatcgaaaa
cgagcagggaaaacgggaaatgactgagaaagacgagaagattttgagagaaagagccgc
catagcaacacagcatcgtctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATACCGGGAAGTTTCAGCCACCG 192 509 930 Antisense
TTCAGCCACCGGTGGAAATCCTCCC 172 631 944 Antisense
GTGATCACCCTAATAATGCTGCGAA 640 483 979 Antisense
GCGAAATCTCTCATCTTTTGTAGTA 484 289 999 Antisense
TAAAATCGACTCGCCACATTCAAGC 708 639 1022 Antisense
ATCTTCCTCCGCAACATTCAATGGT 468 31 1047 Antisense
TAATACCGCCGGAGAGCTCATCATT 238 627 1242 Antisense
AGCGATCGTACCCGAGAACGTCATC 602 81 1270 Antisense
TGTTTCGACAAACTTCGTTCCGCCA 636 555 1309 Antisense
TTCGTTCCGCCATCTATGCAATCGA 688 693 1322 Antisense
GCCATAGCAACACAGCATCGTCTAC 361 281 1408 Antisense
Sequence Source Affymetrix Proprietary Database