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[187577_at]

Description B0280.3 /REP_DB=WormBase Gene ID /WP=CE00733 /TR=SW:P41994 /GB=AAA19091.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 47      6grp_total > 65      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15450
1 2 3 4 range
A 2989
(-2.4)
P 		1839.3
(-3)
P 		2814.6
(-2.5)
P 		12893.9
(3)
P 		11055
B 2449.5
(-2.9)
P 		2292.2
(-3)
P 		2725
(-2.8)
P 		13271.5
(3)
P 		10979
C 2763.4
(-2.9)
P 		2514
(-3)
P 		2591.9
(-3)
P 		17289.3
(3)
P 		14775
avr 2734
(-2.7) 		2215.2
(-3) 		2710.5
(-2.8) 		14484.9
(3) 		12270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2590
1 2 3 4 5 6 range
A 1945.7
(-3)
P 		2661.4
(-1.1)
P 		4215.7
(3)
P 		3469.9
(1)
P 		2973.1
(-0.3)
P 		4138.5
(2.8)
P 		2270
B 2155
(-3)
P 		2929.2
(-1)
P 		4508.4
(3)
P 		3600.3
(0.7)
P 		3214.3
(-0.3)
P 		4463.4
(2.9)
P 		2353
C 2007.3
(-3)
P 		2615.3
(-1.6)
P 		3469
(0.5)
P 		3702.3
(1)
P 		2856.8
(-1)
P 		4535.7
(3)
P 		2528
avr 2036
(-3) 		2735.3
(-1.2) 		4064.4
(2.2) 		3590.8
(1) 		3014.7
(-0.5) 		4379.2
(3) 		2343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2516
1 2 3 4 range
A 1088.3
(-0.2)
P 		399.3
(-3)
P 		735.8
(-1.6)
P 		1887.4
(3)
P 		1488
B 781.1
(-2.4)
P 		566.1
(-3)
P 		631.4
(-2.8)
P 		2828.2
(3)
P 		2262
C 914.8
(-2.5)
P 		722.8
(-3)
P 		903.4
(-2.5)
P 		2915.2
(3)
P 		2192
avr 928.1
(-1.9) 		562.7
(-3) 		756.9
(-2.4) 		2543.6
(3) 		1981

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1306
1 2 3 4 5 6 range
A 358.7
(-3)
P 		946.5
(2.4)
P 		918.1
(2.2)
P 		880
(1.8)
P 		897.2
(2)
P 		1007.6
(3)
P 		649
B 749.8
(-3)
P 		975
(-1.5)
P 		1094.8
(-0.7)
P 		953.6
(-1.7)
P 		1305.9
(0.6)
P 		1664.4
(3)
P 		915
C 744
(-3)
P 		798
(-2.6)
P 		882.9
(-1.9)
P 		744.5
(-3)
P 		924.4
(-1.6)
P 		1518.4
(3)
P 		774
avr 617.5
(-3) 		906.5
(-0.8) 		965.3
(-0.3) 		859.4
(-1.1) 		1042.5
(0.3) 		1396.8
(3) 		779
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187577_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7056
Sequence Type Exemplar sequence
Representative Public ID B0280.3 NCBI
Target Description B0280.3 /REP_DB=WormBase Gene ID /WP=CE00733 /TR=SW:P41994 /GB=AAA19091.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066155 NCBI Caenorhabditis elegans B0280.3 (B0280.3) mRNA, complete cds. 11/11 None
SNAP00000041611 ENSEMBL cdna:SNAP chromosome:CEL140:III:7123109:7124082:1 11/11 None
GENEFINDER00000041626 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7123109:7124082:1 11/11 None
B0280.3.2 ENSEMBL cdna:known chromosome:CEL140:III:7123052:7124183:1 gene:B0280.3 11/11 None
B0280.3.1 ENSEMBL cdna:known chromosome:CEL140:III:7123089:7124259:1 gene:B0280.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7123106-7124080(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0280.3
Entrez Gene 175995 Entrez gene
SwissProt P41994 EMBL-EBI
WormBase CE00733 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16184_AT expressed protein at
ATH1-121501:265742_AT expressed protein at
CANINE_2:CFA.335.2.S1_AT similar to ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) cfa
CANINE_2:CFAAFFX.11923.1.S1_S_AT similar to ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) cfa
DROSOPHILA_2:1627655_AT dm
DROSGENOME1:147765_AT dm
CHICKEN:GGAAFFX.10175.1.S1_S_AT ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) gga
HU35KSUBD:RC_AA425742_S_AT ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) hs
HUGENEFL:L35035_AT ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) hs
U133_X3P:HS.79886.0.A1_3P_AT ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) hs
HG-U133A_2:212973_AT ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) hs
HG-U133_PLUS_2:212973_AT ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) hs
HG-U133A:212973_AT ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) hs
HG-U95AV2:38036_AT ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) hs
HG-U95C:66178_AT Ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) hs
HU35KSUBD:RC_AA410395_AT Ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) hs
MU11KSUBA:L35034_S_AT ribose 5-phosphate isomerase A mm
MG-U74AV2:103322_AT ribose 5-phosphate isomerase A mm
MOE430A:1418337_AT ribose 5-phosphate isomerase A mm
MOUSE430A_2:1418337_AT ribose 5-phosphate isomerase A mm
MOUSE430_2:1418337_AT ribose 5-phosphate isomerase A mm
RG-U34B:RC_AA996886_AT ribose 5-phosphate isomerase A (predicted) rn
RAE230A:1389468_AT ribose 5-phosphate isomerase A (predicted) rn
RAT230_2:1389468_AT ribose 5-phosphate isomerase A (predicted) rn
YEAST_2:1779097_AT Ribose-5-phosphate ketol-isomerase, catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9052 pentose-phosphate shunt, non-oxidative branch inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4751 ribose-5-phosphate isomerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA19091 Hypothetical protein B0280.3 [Caenorhabditis elegans] ref|NP_498556.1| B0280.3 [Caenorhabditis elegans] sp|P41994|RPIA_CAEEL Probable-ribose 5-phosphate isomerase (Phosphoriboisomerase) 1.0E-144
blast CAE70135 Hypothetical protein CBG16597 [Caenorhabditis briggsae] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR004788 EMBL-EBI Ribose 5-phosphate isomerase 1.1E-90
Sequence
Target Sequence 
>C. ELEGANS:187577_AT
atcatctgtgttccaaccagttttttgacaaaacaatggctgattgagtctggtctccct
gtctccgatttggattcacatccagaactggatgtgtgtattgatggagctgatgaagtt
gacggacagttcacgtgcatcaaaggcggaggtggatgtctggctcaagaaaaaattgtt
caaaccgctgcaaaaaacttttacgtgatcgctgattatttaaaagattccaaacacttg
ggtgatcgctatccgaatgtcccaattgaggttctacctcttgctgctcaaccacttcta
cgttcgattccacgcgctgaaggtggaagctgtcaacttcgacaagctgtcaaaaagtgc
ggaccaattgtgacagacaatggaaacttcattattgattggcagttcgagaaaaacgta
tccggaagagattggttcgcgattcagcaacgattggccaatacaccaggaattgttgaa
accggattattcatcggttgcgtcgacgcagtattcttcgcgtactctgacggatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATCTGTGTTCCAACCAGTTTTT 679 29 199 Antisense
ATGGCTGATTGAGTCTGGTCTCCCT 162 53 234 Antisense
CCCTGTCTCCGATTTGGATTCACAT 535 259 255 Antisense
GTTGACGGACAGTTCACGTGCATCA 103 439 316 Antisense
AAGGCGGAGGTGGATGTCTGGCTCA 94 161 341 Antisense
GGGTGATCGCTATCCGAATGTCCCA 65 497 438 Antisense
GAATGTCCCAATTGAGGTTCTACCT 642 331 453 Antisense
GAGATTGGTTCGCGATTCAGCAACG 592 397 626 Antisense
GATTATTCATCGGTTGCGTCGACGC 282 429 683 Antisense
GCGTCGACGCAGTATTCTTCGCGTA 684 291 698 Antisense
ATTCTTCGCGTACTCTGACGGATCT 519 11 711 Antisense
Sequence Source Affymetrix Proprietary Database