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[187576_at]

Description EEED8.2 /REP_DB=WormBase Gene ID /WP=CE01886 /TR=SW:Q09529 /GB=AAC46762.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 66      6grp_total > 75      4grp_total > 19      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 22.9
(-2.1)
A 		52.6
(-0.6)
M 		3.7
(-3)
A 		125.1
(3)
P 		121
B 20.4
(-3)
A 		41.8
(-0.8)
A 		19.9
(-3)
A 		80.1
(3)
P 		60
C 59.3
(-0.3)
P 		36.8
(-1.5)
A 		6.8
(-3)
A 		123.2
(3)
P 		116
avr 34.2
(-1.5) 		43.7
(-1) 		10.1
(-3) 		109.5
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 77.3
(-1.8)
P 		52.4
(-3)
P 		106.7
(-0.3)
P 		175.2
(3)
P 		67.7
(-2.3)
A 		103.5
(-0.5)
P 		123
B 129.5
(1.9)
P 		53.4
(-3)
P 		99.4
(-0)
P 		106.5
(0.4)
P 		67.7
(-2.1)
P 		146.8
(3)
P 		93
C 139.7
(1.3)
P 		88.7
(-3)
P 		96.1
(-2.4)
P 		133.2
(0.8)
P 		93.1
(-2.6)
P 		159.1
(3)
P 		70
avr 115.5
(1.1) 		64.8
(-3) 		100.7
(-0.1) 		138.3
(3) 		76.2
(-2.1) 		136.5
(2.9) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 8.4
(-0.4)
A 		11.4
(0.6)
M 		1
(-3)
A 		18.3
(3)
P 		17
B 6.5
(-2.1)
A 		10.3
(-0.3)
A 		4.6
(-3)
A 		17.1
(3)
P 		13
C 19.6
(2.6)
P 		10.6
(-0.3)
A 		2.4
(-3)
A 		20.8
(3)
P 		18
avr 11.5
(0.3) 		10.8
(0) 		2.7
(-3) 		18.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.3
(-3)
P 		18.6
(-2.1)
P 		23.2
(-1.2)
P 		44.4
(3)
P 		20.4
(-1.8)
A 		25.2
(-0.8)
P 		30
B 45
(1.4)
P 		17.8
(-3)
P 		24.1
(-2)
P 		28.2
(-1.3)
P 		27.5
(-1.4)
P 		54.7
(3)
P 		37
C 51.8
(2.7)
P 		27.1
(-2.5)
P 		24.5
(-3)
P 		26.8
(-2.5)
P 		30.1
(-1.8)
P 		53.3
(3)
P 		29
avr 37
(1.1) 		21.2
(-3) 		23.9
(-2.3) 		33.1
(0.1) 		26
(-1.8) 		44.4
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4852
Sequence Type Exemplar sequence
Representative Public ID EEED8.2 NCBI
Target Description EEED8.2 /REP_DB=WormBase Gene ID /WP=CE01886 /TR=SW:Q09529 /GB=AAC46762.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062625 NCBI Caenorhabditis elegans EEED8.2 (EEED8.2) mRNA, complete cds. 11/11 None
SNAP00000023178 ENSEMBL cdna:SNAP chromosome:CEL140:II:5416706:5418329:1 11/11 None
GENEFINDER00000023194 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5416706:5418410:1 11/11 None
EEED8.2 ENSEMBL cdna:known chromosome:CEL140:II:5416684:5418329:1 gene:EEED8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5416703-5418327(+) 98.33 100.0
Public Domain and Genome References
Gene Title
Ensembl EEED8.2
Entrez Gene 173923 Entrez gene
SwissProt Q09529 EMBL-EBI
WormBase CE01886 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46762 Hypothetical protein EEED8.2 [Caenorhabditis elegans] ref|NP_495026.1| EEED8.2 [Caenorhabditis elegans] sp|Q09529|YQO2_CAEEL Hypothetical protein EEED8.2 in chromosome II 1.0E-169
Sequence
Target Sequence 
>C. ELEGANS:187576_AT
gaaactggcaacagagctcgtagctattcgagccgactgctcaagcttgaatcgctctga
aagagagtgcagatatgatattgaaaggatctttgcgaaacttgaagaagagtcattctt
cagtctccacgagaatccaattcaacgaacaatcagtggaacttggaaagtaatcaagat
cagcaatttcgatgaattctttgcagctcaagatatatctcaattccatgctttgataat
taagaatcaatgtttgtactttaaagtgaacaaacatcaagtgaaaactcaatcgtacca
tgaaagaagttggaagccacgtgcaagagaagaaatccattattttaattttccgaattc
cctgggagaattgtattctgtggagaagaataagttgattctaactgtaacacaagaaga
aaatgataagaaaaaagtgatttctcgagttgagagatcggttgtcgatggacaaatgaa
agaaatctgggagagaaatggagtcatttgcgagagaatcttcaagaagattcctgacca
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGGCAACAGAGCTCGTAGCT 659 357 309 Antisense
GTAGCTATTCGAGCCGACTGCTCAA 299 457 328 Antisense
GACTGCTCAAGCTTGAATCGCTCTG 426 375 343 Antisense
GAAAGGATCTTTGCGAAACTTGAAG 224 361 391 Antisense
GAAGAGTCATTCTTCAGTCTCCACG 263 339 415 Antisense
GTCTCCACGAGAATCCAATTCAACG 404 471 431 Antisense
TTCGATGAATTCTTTGCAGCTCAAG 691 693 496 Antisense
AGATATATCTCAATTCCATGCTTTG 61 67 519 Antisense
GTGAAAACTCAATCGTACCATGAAA 691 471 589 Antisense
GAAGTTGGAAGCCACGTGCAAGAGA 253 337 614 Antisense
ATCTTCAAGAAGATTCCTGACCAGA 657 31 826 Antisense
Sequence Source Affymetrix Proprietary Database