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[187575_at]

Description B0252.6 /REP_DB=WormBase Gene ID /WP=CE02422 /TR=SW:Q10919 /GB=AAC46760.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 2.3
(-3)
A 		23.7
(-1.9)
A 		12.3
(-2.5)
A 		121.6
(3)
A 		119
B 38
(-1)
A 		42.7
(-0.7)
A 		4
(-3)
A 		106.8
(3)
A 		103
C 5.8
(-2.8)
A 		20.1
(-1.9)
A 		2.6
(-3)
A 		95.2
(3)
P 		93
avr 15.4
(-2.5) 		28.8
(-1.7) 		6.3
(-3) 		107.9
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 59.9
(3)
A 		36.7
(-1.7)
A 		52
(1.4)
A 		30.5
(-3)
A 		31.8
(-2.7)
A 		60
(3)
A 		30
B 31.5
(-3)
A 		53.4
(1.5)
A 		60.4
(3)
A 		39.7
(-1.3)
P 		43.3
(-0.6)
A 		42.4
(-0.7)
A 		29
C 38.2
(0.3)
A 		30.4
(-0.4)
A 		1.6
(-3)
A 		68.2
(3)
A 		26.2
(-0.8)
A 		50.3
(1.4)
M 		67
avr 43.2
(0.3) 		40.2
(-0.8) 		38
(-1.5) 		46.1
(1.3) 		33.8
(-3) 		50.9
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 0.8
(-3)
A 		5.1
(-1.5)
A 		3.2
(-2.2)
A 		17.8
(3)
A 		17
B 12.1
(0.1)
A 		10.5
(-0.4)
A 		0.9
(-3)
A 		22.8
(3)
A 		22
C 1.9
(-2.6)
A 		5.8
(-1.1)
A 		0.9
(-3)
A 		16
(3)
P 		15
avr 4.9
(-1.9) 		7.1
(-1.1) 		1.7
(-3) 		18.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11.1
(-0)
A 		13
(1.6)
A 		11.3
(0.1)
A 		7.7
(-3)
A 		9.6
(-1.3)
A 		14.6
(3)
A 		7
B 11
(-2.6)
A 		17.8
(3)
A 		14.7
(0.5)
A 		10.5
(-3)
P 		17.6
(2.8)
A 		15.8
(1.4)
A 		7
C 14.2
(2)
A 		9.3
(0.3)
A 		0.4
(-3)
A 		13.7
(1.9)
A 		8.5
(-0)
A 		16.8
(3)
M 		16
avr 12.1
(-0.1) 		13.4
(1) 		8.8
(-3) 		10.6
(-1.4) 		11.9
(-0.3) 		15.7
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187575_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4319
Sequence Type Exemplar sequence
Representative Public ID B0252.6 NCBI
Target Description B0252.6 /REP_DB=WormBase Gene ID /WP=CE02422 /TR=SW:Q10919 /GB=AAC46760.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063019 NCBI Caenorhabditis elegans B0252.6 (B0252.6) mRNA, complete cds. 11/11 None
B0252.6 ENSEMBL cdna:known chromosome:CEL140:II:6924182:6924899:-1 gene:B0252.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6924177-6924895(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0252.6
Entrez Gene 181889 Entrez gene
SwissProt Q10919 EMBL-EBI
WormBase CE34632 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46760 Hypothetical protein B0252.6 [Caenorhabditis elegans] ref|NP_495420.2| B0252.6 [Caenorhabditis elegans] sp|Q10919|YT16_CAEEL Hypothetical protein B0252.6 in chromosome II 1.0E-111
blast CAE65997 Hypothetical protein CBG11188 [Caenorhabditis briggsae] 3.0E-53
Sequence
Target Sequence 
>C. ELEGANS:187575_AT
aatccagccacttcgtgcgtaaaaaaatttgtacatcctactcttcccaatgatattcct
atttcaataaatcttcaatggtctccttggtcagaatgcaacgatcggacacaaactaga
actgggcaatgcttcataagattggaacgccaattagatgattccgatggtttaccggaa
aattggagttggcttaggaaattaaatacgatggaaaaacatttagcgttccgcgatggc
gttccactctttaacggactgttggctagttggctttatgaagttgaaagtctagaatca
tgtttagacaccgaattagggccgaagtctaaacttagtgggtatgacaatttctttggt
aatgtcttaacttcactgttttcaaacaaaactatttccggaattaaaatgtctgataat
gcgttcaaatattgcataagaaccaaaacattggacgaaacgaacgacgctcttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCAGCCACTTCGTGCGTAAAAA 397 167 118 Antisense
ACATCCTACTCTTCCCAATGATATT 293 107 150 Antisense
AAATCTTCAATGGTCTCCTTGGTCA 668 117 186 Antisense
GGTCTCCTTGGTCAGAATGCAACGA 16 503 197 Antisense
GATCGGACACAAACTAGAACTGGGC 588 379 220 Antisense
ACATTTAGCGTTCCGCGATGGCGTT 244 105 336 Antisense
GCGTTCCACTCTTTAACGGACTGTT 41 291 356 Antisense
AACGGACTGTTGGCTAGTTGGCTTT 61 139 370 Antisense
GACACCGAATTAGGGCCGAAGTCTA 305 351 424 Antisense
GTAATGTCTTAACTTCACTGTTTTC 271 463 476 Antisense
GGACGAAACGAACGACGCTCTTATT 425 523 570 Antisense
Sequence Source Affymetrix Proprietary Database