[Home] | [Total List]

[187573_at]

Description T26G10.5 /REP_DB=WormBase Gene ID /WP=CE00341 /TR=SW:P34584 /GB=CAA82364.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1498
1 2 3 4 range
A 405.6
(-2.2)
P 		246.4
(-2.9)
P 		211
(-3)
M 		1638.4
(3)
P 		1427
B 505.7
(-2)
P 		335.9
(-2.7)
A 		271.8
(-3)
A 		1683
(3)
P 		1411
C 435.5
(-1.9)
P 		399.7
(-2)
A 		184.6
(-3)
A 		1534.5
(3)
P 		1350
avr 448.9
(-2) 		327.3
(-2.5) 		222.5
(-3) 		1618.6
(3) 		1396

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 284.9
(1.9)
M 		286.5
(1.9)
A 		216.4
(0.3)
P 		77.8
(-3)
A 		276.6
(1.7)
P 		333.2
(3)
P 		255
B 436.9
(3)
P 		256.4
(-0.7)
P 		147.1
(-3)
A 		157.5
(-2.8)
A 		336.5
(0.9)
P 		312.1
(0.4)
P 		290
C 336
(1.2)
P 		322.3
(1)
P 		81.2
(-3)
A 		174.3
(-1.5)
A 		160.9
(-1.7)
P 		442.5
(3)
P 		361
avr 352.6
(2.7) 		288.4
(1) 		148.2
(-2.7) 		136.5
(-3) 		258
(0.2) 		362.6
(3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 147.7
(0)
P 		53.5
(-3)
P 		55.2
(-2.9)
M 		239.8
(3)
P 		186
B 161.3
(-1)
P 		83
(-2.6)
A 		63
(-3)
A 		358.7
(3)
P 		296
C 144.2
(-0.5)
P 		114.9
(-1.4)
A 		64.4
(-3)
A 		258.7
(3)
P 		194
avr 151.1
(-0.6) 		83.8
(-2.4) 		60.9
(-3) 		285.7
(3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 52.5
(-0.6)
M 		101.9
(3)
A 		47.1
(-1)
P 		19.7
(-3)
A 		83.5
(1.7)
P 		81.1
(1.5)
P 		82
B 152
(3)
P 		85.3
(-0.4)
P 		35.7
(-3)
A 		41.7
(-2.7)
A 		136.7
(2.2)
P 		116.4
(1.2)
P 		116
C 124.5
(1.9)
P 		98.4
(0.7)
P 		20.7
(-3)
A 		35
(-2.3)
A 		52.1
(-1.5)
P 		148.1
(3)
P 		127
avr 109.7
(2.6) 		95.2
(1.6) 		34.5
(-2.8) 		32.1
(-3) 		90.8
(1.2) 		115.2
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6669
Sequence Type Exemplar sequence
Representative Public ID T26G10.5 NCBI
Target Description T26G10.5 /REP_DB=WormBase Gene ID /WP=CE00341 /TR=SW:P34584 /GB=CAA82364.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066671(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066671 NCBI Caenorhabditis elegans T26G10.5 (T26G10.5) mRNA, complete cds. 11/11 None
T26G10.5 ENSEMBL cdna:known chromosome:CEL140:III:9425451:9426570:-1 gene:T26G10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004821 8/11 Cross Hyb Matching Probes None
GENEFINDER00000004824 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9425446-9426566(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26G10.5
Entrez Gene 188945 Entrez gene
SwissProt P34584 EMBL-EBI
WormBase CE00341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82364 Hypothetical protein T26G10.5 [Caenorhabditis elegans] ref|NP_499072.1| T26G10.5 [Caenorhabditis elegans] sp|P34584|YN25_CAEEL Hypothetical protein T26G10.5 in chromosome III 2.0E-69
blast CAE65220 Hypothetical protein CBG10096 [Caenorhabditis briggsae] 6.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499072.1 1 34-56
T26G10.5 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:187573_AT
cccagtctattcacatccggtgttacatcttgtaaaaaaacaacaatatatattttttcg
tttctttttcttggggaattcttggatatcttactacatcaaaattatgatgttccggct
cttccttcttatttctttcattgttttgtgccactccattgtttctgaaatctctcacag
attcttgcatcgagatccagagtacgaaggaagagtctactacgagcctctatacacatc
gaaagatttccgtcttggtggttcagcccaactctctccactatatgaaatgacgaattc
acatcttctcaacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAGTCTATTCACATCCGGTGTTA 370 257 30 Antisense
TCACATCCGGTGTTACATCTTGTAA 375 627 40 Antisense
GGGGAATTCTTGGATATCTTACTAC 26 499 102 Antisense
TTCCTTCTTATTTCTTTCATTGTTT 62 701 151 Antisense
TTCATTGTTTTGTGCCACTCCATTG 371 689 166 Antisense
GCCACTCCATTGTTTCTGAAATCTC 473 279 179 Antisense
ATCTCTCACAGATTCTTGCATCGAG 405 33 199 Antisense
TTCTTGCATCGAGATCCAGAGTACG 704 683 211 Antisense
GAGTCTACTACGAGCCTCTATACAC 299 397 242 Antisense
AAGATTTCCGTCTTGGTGGTTCAGC 485 153 272 Antisense
GACGAATTCACATCTTCTCAACTTG 477 375 321 Antisense
Sequence Source Affymetrix Proprietary Database