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[187572_at]

Description ZK353.4 /REP_DB=WormBase Gene ID /WP=CE00388 /TR=SW:P34627 /GB=AAA28202.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 21      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 28.6
(1.9)
A 		32.3
(3)
A 		12.7
(-3)
A 		15.7
(-2.1)
A 		20
B 46.6
(3)
A 		25.8
(-0.6)
A 		21.5
(-1.4)
A 		12.2
(-3)
A 		34
C 11.4
(-2.7)
A 		7.6
(-3)
A 		13.9
(-2.5)
A 		86.3
(3)
A 		79
avr 28.9
(0.5) 		21.9
(-1.4) 		16
(-3) 		38.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 31
(-2)
A 		11.5
(-3)
A 		25.9
(-2.3)
A 		27
(-2.2)
A 		127.2
(3)
A 		105
(1.8)
M 		116
B 37.9
(-1.4)
A 		10.4
(-3)
A 		9.8
(-3)
A 		114.5
(3)
A 		66.1
(0.2)
A 		100.4
(2.2)
P 		105
C 11.8
(-3)
A 		56.2
(-0.1)
A 		13.1
(-2.9)
A 		102.6
(3)
A 		69.6
(0.8)
A 		103.2
(3)
P 		91
avr 26.9
(-2.3) 		26
(-2.3) 		16.3
(-3) 		81.4
(1.5) 		87.6
(1.9) 		102.9
(3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.4
(3)
A 		7
(0.5)
A 		3.3
(-2.3)
A 		2.3
(-3)
A 		8
B 14.9
(3)
A 		6.4
(-1.1)
A 		5
(-1.8)
A 		2.6
(-3)
A 		12
C 3.8
(-2.2)
A 		2.2
(-3)
A 		4.9
(-1.7)
A 		14.6
(3)
A 		12
avr 9.7
(3) 		5.2
(-2.1) 		4.4
(-3) 		6.5
(-0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.7
(-2.7)
A 		4.1
(-3)
A 		5.6
(-2.7)
A 		6.8
(-2.5)
A 		38.4
(3)
A 		25.6
(0.8)
M 		34
B 13.2
(-1.1)
A 		3.5
(-2.8)
A 		2.4
(-3)
A 		30.3
(1.8)
A 		26.8
(1.2)
A 		37.4
(3)
P 		35
C 4.4
(-2.8)
A 		17.1
(-0.3)
A 		3.3
(-3)
A 		20.6
(0.3)
A 		22.5
(0.7)
A 		34.5
(3)
P 		31
avr 7.8
(-2.2) 		8.2
(-2.1) 		3.8
(-3) 		19.2
(0.2) 		29.2
(2.3) 		32.5
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7771
Sequence Type Exemplar sequence
Representative Public ID ZK353.4 NCBI
Target Description ZK353.4 /REP_DB=WormBase Gene ID /WP=CE00388 /TR=SW:P34627 /GB=AAA28202.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066449 NCBI Caenorhabditis elegans ZK353.4 (ZK353.4) mRNA, complete cds. 11/11 None
SNAP00000044091 ENSEMBL cdna:SNAP chromosome:CEL140:III:8388422:8389416:-1 10/11 None
GENEFINDER00000044100 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8388422:8389554:-1 10/11 None
ZK353.4 ENSEMBL cdna:known chromosome:CEL140:III:8388422:8389554:-1 gene:ZK353.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8388417-8389550(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK353.4
Entrez Gene 191288 Entrez gene
SwissProt P34627 EMBL-EBI
WormBase CE00388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28202 Hypothetical protein ZK353.4 [Caenorhabditis elegans] ref|NP_498850.1| ZK353.4 [Caenorhabditis elegans] sp|P34627|YOJ4_CAEEL Hypothetical protein ZK353.4 in chromosome III 1.0E-149
blast AAA28202 Hypothetical protein ZK353.4 [Caenorhabditis elegans] ref|NP_498850.1| ZK353.4 [Caenorhabditis elegans] sp|P34627|YOJ4_CAEEL Hypothetical protein ZK353.4 in chromosome III 1.0E-135
blast AAA28202 Hypothetical protein ZK353.4 [Caenorhabditis elegans] ref|NP_498850.1| ZK353.4 [Caenorhabditis elegans] sp|P34627|YOJ4_CAEEL Hypothetical protein ZK353.4 in chromosome III 1.0E-113
blast CAE71270 Hypothetical protein CBG18153 [Caenorhabditis briggsae] 1.0E-31
blast CAE71270 Hypothetical protein CBG18153 [Caenorhabditis briggsae] 6.0E-30
blast CAE71270 Hypothetical protein CBG18153 [Caenorhabditis briggsae] 2.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498850.1 1 30-52
ZK353.4 1 30-52
GENEFINDER00000044100 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:187572_AT
ccaaagcttccacgccaaaaactgaaaaattggtatccaaggagccaagtacggaagaat
tatcggtaaagaatagcctaacggatttgaaaaatgaagcaacaaaaatggcaaacactt
cttcttctgcaaatagaacaggagagatttctgtcgaaatcgtttctccgagtaagtatt
tccaatgtcttctgccaactcataatttaattccagagccaaccaccgcagttcaagctt
caactcctgaaaaaccaatgtcaagtgcagaatctgcgatggaatcctcgattggaagtg
atatttcgacttacatagtctcatcaaagcgaagtgaagtgaataattacaacatgatag
aagctggtcgaactccgccaatgtcatttagtgaatcatatgctcaaactgctatcccta
cagcaaacactcctccaactgtggttcatgtctcgaaaccatcttctgaaacatccgtgt
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAAGCTTCCACGCCAAAAACTGA 24 277 419 Antisense
ATGGCAAACACTTCTTCTTCTGCAA 414 53 526 Antisense
ATTTCTGTCGAAATCGTTTCTCCGA 636 15 565 Antisense
CCAATGTCTTCTGCCAACTCATAAT 466 277 600 Antisense
CGCAGTTCAAGCTTCAACTCCTGAA 31 255 645 Antisense
GAATCTGCGATGGAATCCTCGATTG 124 329 688 Antisense
TGATAGAAGCTGGTCGAACTCCGCC 277 565 773 Antisense
TATGCTCAAACTGCTATCCCTACAG 35 655 817 Antisense
ACACTCCTCCAACTGTGGTTCATGT 168 111 845 Antisense
TTCATGTCTCGAAACCATCTTCTGA 685 687 863 Antisense
ACCATCTTCTGAAACATCCGTGTCA 532 85 876 Antisense
Sequence Source Affymetrix Proprietary Database