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[187571_at]

Description T23F2.4 /REP_DB=WormBase Gene ID /WP=CE04999 /TR=SW:Q22701 /GB=AAA80386.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 27.7
(-1.9)
A 		9.9
(-3)
A 		9.3
(-3)
A 		112.5
(3)
A 		103
B 38
(-2)
A 		30.6
(-3)
A 		34.2
(-2.5)
A 		76.4
(3)
A 		46
C 37.3
(-0.8)
A 		31.9
(-1.3)
A 		12.9
(-3)
A 		79.4
(3)
A 		67
avr 34.3
(-1.7) 		24.1
(-2.5) 		18.8
(-3) 		89.4
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 939
1 2 3 4 5 6 range
A 167.7
(-1.7)
M 		88.3
(-2.4)
A 		31.6
(-3)
A 		55.9
(-2.8)
A 		641
(3)
P 		536.9
(2)
P 		609
B 138.3
(-2.2)
P 		83.4
(-2.6)
A 		41.4
(-2.9)
A 		18.8
(-3)
A 		411.5
(-0.5)
P 		957.8
(3)
P 		939
C 71.9
(-2.8)
A 		99.3
(-2.6)
A 		46.6
(-3)
A 		52.7
(-3)
A 		255
(-1.4)
P 		830.5
(3)
P 		784
avr 126
(-2.3) 		90.3
(-2.6) 		39.9
(-3) 		42.5
(-3) 		435.8
(0.2) 		775.1
(3) 		735
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.1
(0.3)
A 		2.1
(-3)
A 		2.4
(-2.9)
A 		16.5
(3)
A 		14
B 12.1
(0.1)
A 		7.5
(-3)
A 		7.9
(-2.7)
A 		16.3
(3)
A 		9
C 12.3
(2.3)
A 		9.2
(0.2)
A 		4.5
(-3)
A 		13.4
(3)
A 		9
avr 11.5
(0.8) 		6.3
(-2.2) 		4.9
(-3) 		15.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 30.9
(-2.2)
M 		31.4
(-2.2)
A 		6.9
(-3)
A 		14.2
(-2.8)
A 		193.4
(3)
P 		130.7
(1)
P 		187
B 48.1
(-2.3)
P 		27.8
(-2.6)
A 		10
(-2.9)
A 		5
(-3)
A 		167.2
(-0.2)
P 		357.2
(3)
P 		352
C 26.7
(-2.6)
A 		30.3
(-2.6)
A 		11.9
(-3)
A 		10.6
(-3)
A 		82.5
(-1.4)
P 		278
(3)
P 		267
avr 35.2
(-2.4) 		29.8
(-2.5) 		9.6
(-3) 		9.9
(-3) 		147.7
(0.4) 		255.3
(3) 		246
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187571_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17069
Sequence Type Exemplar sequence
Representative Public ID T23F2.4 NCBI
Target Description T23F2.4 /REP_DB=WormBase Gene ID /WP=CE04999 /TR=SW:Q22701 /GB=AAA80386.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076534(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076534 NCBI Caenorhabditis elegans T23F2.4 (T23F2.4) mRNA, complete cds. 11/11 None
T23F2.4 ENSEMBL cdna:known chromosome:CEL140:X:5514781:5515303:-1 gene:T23F2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015217 6/11 Cross Hyb Matching Probes None
GENEFINDER00000015223 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5514780-5515303(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F2.4
Entrez Gene 188806 Entrez gene
SwissProt Q22701 EMBL-EBI
WormBase CE04999 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80386 Hypothetical protein T23F2.4 [Caenorhabditis elegans] ref|NP_508935.1| T23F2.4 [Caenorhabditis elegans] pir||T16929 hypothetical protein T23F2.4 - Caenorhabditis elegans 4.0E-39
blast Q22701 Hypothetical UPF0057 protein T23F2.4 in chromosome X 5.0E-27
blast CAE68836 Hypothetical protein CBG14797 [Caenorhabditis briggsae] emb|CAE68761.1| Hypothetical protein CBG14696 [Caenorhabditis briggsae] 4.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 5.6E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508935.1 2 21-43,53-75
T23F2.4 2 21-43,53-75
Sequence
Target Sequence 
>C. ELEGANS:187571_AT
tggcttttcaagtttcttttaagatcccaaatcccaaaactcctcctctcagctccagaa
tggctattacttgcatggacatcccgaagttcctcttcgctcttcttctcccgccagttg
gtgtcttcctcgagaaaggctgcacccatcacctcgccatctgcattctgctcacaattc
tcggctacattcccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTTTTCAAGTTTCTTTTAAGAT 361 543 14 Antisense
TCAAGTTTCTTTTAAGATCCCAAAT 224 625 21 Antisense
TAAGATCCCAAATCCCAAAACTCCT 550 637 33 Antisense
TCCTCTCAGCTCCAGAATGGCTATT 136 593 57 Antisense
GCTCCAGAATGGCTATTACTTGCAT 665 297 65 Antisense
GGCTATTACTTGCATGGACATCCCG 189 539 75 Antisense
TTGCATGGACATCCCGAAGTTCCTC 36 705 84 Antisense
CAGTTGGTGTCTTCCTCGAGAAAGG 521 205 128 Antisense
GGTGTCTTCCTCGAGAAAGGCTGCA 554 499 133 Antisense
TCTTCCTCGAGAAAGGCTGCACCCA 618 617 137 Antisense
TCACAATTCTCGGCTACATTCCCGG 557 627 185 Antisense
Sequence Source Affymetrix Proprietary Database