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[187570_at]

Description B0310.6 /REP_DB=WormBase Gene ID /WP=CE03879 /TR=SW:Q10942 /GB=AAA81770.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 48      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 14.3
(-3)
A 		127.5
(1.1)
P 		179.5
(3)
P 		53
(-1.6)
A 		165
B 3.8
(-3)
A 		104.4
(0.2)
P 		190.2
(3)
P 		7.1
(-2.9)
A 		186
C 7.6
(-3)
A 		146.9
(1.4)
P 		199.4
(3)
P 		70.7
(-1)
A 		192
avr 8.6
(-3) 		126.3
(0.9) 		189.7
(3) 		43.6
(-1.8) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 14.4
(-2)
A 		19.5
(-1.3)
A 		8.8
(-2.9)
A 		45.9
(2.7)
A 		47.8
(3)
A 		8
(-3)
A 		40
B 37.2
(0.8)
A 		31.3
(0.1)
A 		16.5
(-1.8)
A 		7.2
(-3)
A 		54.6
(3)
A 		38.8
(1)
A 		47
C 57.4
(1.8)
A 		39.3
(0.2)
A 		4.6
(-3)
A 		20.8
(-1.5)
A 		46.4
(0.8)
A 		70.4
(3)
A 		66
avr 36.3
(1) 		30
(0) 		10
(-3) 		24.6
(-0.8) 		49.6
(3) 		39.1
(1.4) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 5.2
(-3)
A 		27.7
(0.2)
P 		46.9
(3)
P 		7.8
(-2.6)
A 		42
B 1.2
(-3)
A 		25.8
(0.4)
P 		44.1
(3)
P 		1.5
(-3)
A 		43
C 2.5
(-3)
A 		42.2
(0.6)
P 		69.5
(3)
P 		11.9
(-2.2)
A 		67
avr 3
(-3) 		31.9
(0.4) 		53.5
(3) 		7.1
(-2.5) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.6
(-2.7)
A 		6.9
(-0.6)
A 		1.9
(-3)
A 		11.6
(1.7)
A 		14.4
(3)
A 		1.9
(-3)
A 		13
B 13
(0.3)
A 		10.4
(-0.5)
A 		4
(-2.4)
A 		1.9
(-3)
A 		22.2
(3)
A 		14.5
(0.7)
A 		20
C 21.3
(2.4)
A 		12
(-0.1)
A 		1.2
(-3)
A 		4.2
(-2.2)
A 		15
(0.7)
A 		23.6
(3)
A 		22
avr 12.3
(1) 		9.8
(0) 		2.4
(-3) 		5.9
(-1.6) 		17.2
(3) 		13.3
(1.4) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187570_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18411
Sequence Type Exemplar sequence
Representative Public ID B0310.6 NCBI
Target Description B0310.6 /REP_DB=WormBase Gene ID /WP=CE03879 /TR=SW:Q10942 /GB=AAA81770.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075712(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075712 NCBI Caenorhabditis elegans B0310.6 (B0310.6) mRNA, complete cds. 11/11 None
SNAP00000036534 ENSEMBL cdna:SNAP chromosome:CEL140:X:530630:531166:-1 10/11 None
B0310.6 ENSEMBL cdna:known chromosome:CEL140:X:530626:530962:-1 gene:B0310.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014655 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:530625-530962(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0310.6
Entrez Gene 181925 Entrez gene
SwissProt Q10942 EMBL-EBI
WormBase CE03879 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81770 Hypothetical protein B0310.6 [Caenorhabditis elegans] ref|NP_508113.1| B0310.6 [Caenorhabditis elegans] sp|Q10942|YWS6_CAEEL Hypothetical protein B0310.6 in chromosome X 2.0E-33
blast AAA81770 Hypothetical protein B0310.6 [Caenorhabditis elegans] ref|NP_508113.1| B0310.6 [Caenorhabditis elegans] sp|Q10942|YWS6_CAEEL Hypothetical protein B0310.6 in chromosome X 9.0E-21
Sequence
Target Sequence 
>C. ELEGANS:187570_AT
tgctatcctcgtattttctattgctaattcagaaattatagataagagtttggaacaatc
gggtccaattcaagattcttcaaattttgcattagctgtgaatggtgaagaacttccaac
cgacatagccctggaaggccagtctgaagttatgattcgcgccaagagatattatggatg
cggttgtgggtgtggatgtgctactgtagctgcagtgtctccagttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTATCCTCGTATTTTCTATTGCT 605 579 36 Antisense
TCGGGTCCAATTCAAGATTCTTCAA 278 605 94 Antisense
GATTCTTCAAATTTTGCATTAGCTG 653 431 109 Antisense
GTGAATGGTGAAGAACTTCCAACCG 271 481 133 Antisense
CCAACCGACATAGCCCTGGAAGGCC 496 275 151 Antisense
GACATAGCCCTGGAAGGCCAGTCTG 367 369 157 Antisense
GCCAGTCTGAAGTTATGATTCGCGC 350 281 173 Antisense
ATGATTCGCGCCAAGAGATATTATG 96 47 187 Antisense
TTATGGATGCGGTTGTGGGTGTGGA 305 679 207 Antisense
GTGGGTGTGGATGTGCTACTGTAGC 274 489 221 Antisense
ACTGTAGCTGCAGTGTCTCCAGTTC 356 97 238 Antisense
Sequence Source Affymetrix Proprietary Database