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[187565_at]

Description ZK177.1 /REP_DB=WormBase Gene ID /WP=CE02089 /TR=SW:Q09370 /GB=AAG00044.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 6
(-3)
A 		7.4
(-2)
A 		11.9
(1.3)
A 		14.2
(3)
A 		8
B 17
(3)
A 		6
(-2.6)
A 		5.2
(-3)
A 		8.2
(-1.5)
A 		12
C 21.2
(-1.7)
A 		5.3
(-3)
A 		7
(-2.9)
A 		78.8
(3)
A 		74
avr 14.7
(-1.1) 		6.2
(-3) 		8
(-2.6) 		33.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 58.8
(-0.7)
A 		6.8
(-3)
A 		40.7
(-1.5)
A 		6.8
(-3)
A 		86.8
(0.6)
M 		142
(3)
P 		135
B 36.5
(-1.8)
A 		7.2
(-2.9)
A 		4.3
(-3)
A 		5.6
(-3)
A 		51
(-1.3)
A 		167
(3)
P 		163
C 5.7
(-3)
A 		31.4
(-1.8)
A 		11.7
(-2.7)
A 		8.1
(-2.9)
A 		62.9
(-0.4)
A 		136.8
(3)
P 		131
avr 33.7
(-1.9) 		15.1
(-2.6) 		18.9
(-2.5) 		6.8
(-3) 		66.9
(-0.5) 		148.6
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.2
(-0.6)
A 		1.6
(-3)
A 		3.1
(3)
A 		2.1
(-1)
A 		2
B 5.4
(3)
A 		1.5
(-2.6)
A 		1.2
(-3)
A 		1.7
(-2.3)
A 		4
C 7
(-0.2)
A 		1.5
(-3)
A 		2.4
(-2.5)
A 		13.3
(3)
A 		12
avr 4.9
(1.9) 		1.5
(-3) 		2.2
(-2) 		5.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 10.8
(-1.3)
A 		2.4
(-2.9)
A 		8.9
(-1.7)
A 		1.7
(-3)
A 		26.2
(1.5)
M 		34.6
(3)
P 		33
B 12.7
(-1.9)
A 		2.4
(-2.9)
A 		1
(-3)
A 		1.5
(-3)
A 		20.7
(-1.1)
A 		62.3
(3)
P 		61
C 2.1
(-2.9)
A 		9.6
(-1.9)
A 		3
(-2.8)
A 		1.6
(-3)
A 		20.3
(-0.5)
A 		45.8
(3)
P 		44
avr 8.5
(-2.1) 		4.8
(-2.6) 		4.3
(-2.6) 		1.6
(-3) 		22.4
(-0.3) 		47.6
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5587
Sequence Type Exemplar sequence
Representative Public ID ZK177.1 NCBI
Target Description ZK177.1 /REP_DB=WormBase Gene ID /WP=CE02089 /TR=SW:Q09370 /GB=AAG00044.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062659(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062659 NCBI Caenorhabditis elegans ZK177.1 (ZK177.1) mRNA, complete cds. 11/11 None
SNAP00000012891 ENSEMBL cdna:SNAP chromosome:CEL140:II:5528119:5529239:1 11/11 None
GENEFINDER00000012896 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5528119:5529239:1 11/11 None
ZK177.1 ENSEMBL cdna:known chromosome:CEL140:II:5526084:5529544:1 gene:ZK177.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5526081-5529237(+) 99.2 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK177.1
Entrez Gene 173938 Entrez gene
SwissProt Q09370 EMBL-EBI
WormBase CE02089 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00044 Hypothetical protein ZK177.1 [Caenorhabditis elegans] ref|NP_495060.1| ZK177.1 [Caenorhabditis elegans] sp|Q09370|YS41_CAEEL Hypothetical protein ZK177.1 in chromosome II 0.0
Sequence
Target Sequence 
>C. ELEGANS:187565_AT
tgcgtcggatcaaaagtctcgtccaaagccaacaaaaccaagagcatcgagaaaacgagc
agccattgctcaatcgaagaaaaagagatcaggaggtgatctgacacttgatggtcttgt
tcaacttcttggggagatagtcgatccagtaaaacttcaagctgagattgacgagcaaaa
gagtcgccaatcaacatctcaaccagacaaagagattgttcaaagcagccaatacagtca
taatggtttcattcaacatgcttccccacaaatctataactacaattatcagggatacac
catggttcaggctgaagcttatcagcctcaatatcaggagcacgtgcaatatacgcaata
ttctcaaggaccaattaatcaaaccaacatccaggaagtgcaaagtgaagattctgaagg
aatctacgagtattttgttgatcaaccaaactattccaaccaaggaaccaatcagggaac
ttgccaaggattcatccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGTCGGATCAAAAGTCTCGTCCA 213 581 798 Antisense
GTCTCGTCCAAAGCCAACAAAACCA 522 469 813 Antisense
ATCTGACACTTGATGGTCTTGTTCA 557 33 896 Antisense
AGAGTCGCCAATCAACATCTCAACC 108 69 977 Antisense
TGGTTTCATTCAACATGCTTCCCCA 360 551 1041 Antisense
TGCTTCCCCACAAATCTATAACTAC 673 579 1056 Antisense
GATACACCATGGTTCAGGCTGAAGC 394 423 1091 Antisense
GAAGCTTATCAGCCTCAATATCAGG 678 341 1111 Antisense
TATACGCAATATTCTCAAGGACCAA 478 659 1147 Antisense
GATCAACCAAACTATTCCAACCAAG 644 417 1237 Antisense
GGAACTTGCCAAGGATTCATCCAGA 524 529 1273 Antisense
Sequence Source Affymetrix Proprietary Database