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[187564_at]

Description ZC262.2 /REP_DB=WormBase Gene ID /WP=CE00350 /TR=SW:P34594 /GB=AAK29991.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 76      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 73      6grp_total > 66      4grp_total > 31      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 713.6
(3)
P 		565
(0.4)
P 		370.8
(-3)
P 		654.2
(2)
P 		343
B 946.5
(3)
P 		448
(-3)
P 		517.3
(-2.2)
P 		728.2
(0.4)
P 		499
C 679.2
(3)
P 		427.4
(-3)
P 		642.1
(2.1)
P 		496.5
(-1.4)
P 		252
avr 779.8
(3) 		480.1
(-3) 		510.1
(-2.4) 		626.3
(-0.1) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 428.8
(-2.3)
P 		622.1
(3)
P 		526.1
(0.4)
P 		403.7
(-3)
P 		469.9
(-1.2)
P 		579.7
(1.8)
P 		218
B 445
(-3)
P 		570.9
(-0.1)
P 		589.4
(0.4)
P 		563.4
(-0.2)
P 		638.5
(1.5)
P 		701.3
(3)
P 		256
C 545.9
(-1.4)
P 		614.6
(-0.3)
P 		500.8
(-2.1)
P 		535.3
(-1.6)
P 		448.8
(-3)
P 		815.2
(3)
P 		366
avr 473.2
(-3) 		602.5
(0.4) 		538.8
(-1.3) 		500.8
(-2.3) 		519.1
(-1.8) 		698.7
(3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 259.8
(3)
P 		122.6
(-2)
P 		96.9
(-3)
P 		95.8
(-3)
P 		164
B 301.8
(3)
P 		110.6
(-3)
P 		119.9
(-2.7)
P 		155.2
(-1.6)
P 		191
C 224.8
(3)
P 		122.9
(-1.3)
P 		223.8
(3)
P 		83.7
(-3)
P 		141
avr 262.1
(3) 		118.7
(-2.7) 		146.9
(-1.6) 		111.6
(-3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 79
(-3)
P 		221.2
(3)
P 		114.6
(-1.5)
P 		102.4
(-2)
P 		141.8
(-0.4)
P 		141.1
(-0.4)
P 		142
B 154.8
(-2.4)
P 		190
(-0.6)
P 		143.1
(-3)
P 		149.2
(-2.7)
P 		259.4
(2.9)
P 		261.5
(3)
P 		118
C 202.3
(0.4)
P 		187.5
(-0.1)
P 		127.5
(-2.3)
P 		107.7
(-3)
P 		145.2
(-1.6)
P 		272.9
(3)
P 		165
avr 145.4
(-1.5) 		199.6
(1.5) 		128.4
(-2.5) 		119.8
(-3) 		182.1
(0.5) 		225.2
(3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6135
Sequence Type Exemplar sequence
Representative Public ID ZC262.2 NCBI
Target Description ZC262.2 /REP_DB=WormBase Gene ID /WP=CE00350 /TR=SW:P34594 /GB=AAK29991.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066435 NCBI Caenorhabditis elegans ZC262.2a (ZC262.2) mRNA, complete cds. 11/11 None
SNAP00000039713 ENSEMBL cdna:SNAP chromosome:CEL140:III:8332139:8333362:1 11/11 None
GENEFINDER00000039728 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8332139:8333362:1 11/11 None
ZC262.2a ENSEMBL cdna:known chromosome:CEL140:III:8332139:8333362:1 gene:ZC262.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_181969 1/11 Cross Hyb Matching Probes None
ZC262.2b 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
191130 2 1 NM_066435 187564_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8332134-8333358(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC262.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29991 Hypothetical protein ZC262.2a [Caenorhabditis elegans] ref|NP_498836.1| ZC262.2a [Caenorhabditis elegans] sp|P34594|YOD2_CAEEL Hypothetical protein ZC262.2 in chromosome III 9.0E-78
blast AAK29991 Hypothetical protein ZC262.2a [Caenorhabditis elegans] ref|NP_498836.1| ZC262.2a [Caenorhabditis elegans] sp|P34594|YOD2_CAEEL Hypothetical protein ZC262.2 in chromosome III 3.0E-75
blast CAE70159 Hypothetical protein CBG16626 [Caenorhabditis briggsae] 1.0E-48
blast CAE70159 Hypothetical protein CBG16626 [Caenorhabditis briggsae] 6.0E-48
blast AAN84797 Hypothetical protein ZC262.2b [Caenorhabditis elegans] ref|NP_871698.1| ZC262.2b [Caenorhabditis elegans] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:187564_AT
gatctcctaaacgagaccgtcatccagaaaagaatgaatcgagacgtcacgacgatcgcg
atcaagagagaagacgtgattacggaagaaatgatcggcgagatgatagaagaggcgacg
gtagctggaaaacggatcgaaacgatcggaatgatcggagaaacgactttcaaagaagag
atgacaaaaatcgtctctctgctgaagagattgctgctcaacgaaaagctctctggggaa
acaaaaaagtggctggagaatcatcttcctcgaacaccactgacaccgcctcgtcatctt
ctgaacctgcaactggaggaaaaaacgaaaaattatggtcatcagccatcgcagcaactg
gggtcgattcatcaaaagccaacaaattcatgcgtttgatgggcgtcaagaatgcaccga
aaccaacggatgattcgtcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCCTAAACGAGACCGTCATCC 205 419 155 Antisense
GAGACGTCACGACGATCGCGATCAA 708 393 195 Antisense
GGCGACGGTAGCTGGAAAACGGATC 526 513 268 Antisense
ACAAAAATCGTCTCTCTGCTGAAGA 705 111 338 Antisense
TCAACGAAAAGCTCTCTGGGGAAAC 259 593 372 Antisense
GTGGCTGGAGAATCATCTTCCTCGA 126 493 403 Antisense
CATCTTCTGAACCTGCAACTGGAGG 402 213 449 Antisense
AATTATGGTCATCAGCCATCGCAGC 607 175 485 Antisense
GCAGCAACTGGGGTCGATTCATCAA 290 313 505 Antisense
GGGCGTCAAGAATGCACCGAAACCA 602 485 555 Antisense
GAAACCAACGGATGATTCGTCGAGA 402 359 573 Antisense
Sequence Source Affymetrix Proprietary Database