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[187563_at]

Description F40H6.3 /REP_DB=WormBase Gene ID /WP=CE01280 /TR=SW:Q20255 /GB=AAA62520.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 62      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 43.7
(2.9)
A 		8.7
(-3)
A 		44.1
(3)
A 		8.6
(-3)
A 		36
B 10.7
(-2.3)
A 		50.8
(2.9)
A 		51.9
(3)
A 		5.5
(-3)
A 		46
C 65
(3)
A 		18.8
(-3)
A 		20.4
(-2.8)
A 		39.5
(-0.3)
A 		46
avr 39.8
(3) 		26.1
(-0.8) 		38.8
(2.7) 		17.9
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 49.7
(3)
A 		10.3
(-2.3)
A 		23
(-0.6)
A 		5.1
(-3)
A 		6.1
(-2.9)
A 		12
(-2.1)
A 		45
B 20.1
(2.1)
A 		6.1
(-2.4)
A 		7.3
(-2)
A 		5.2
(-2.6)
A 		22.8
(3)
A 		4.1
(-3)
A 		19
C 68.6
(3)
A 		9.6
(-2.5)
A 		11
(-2.4)
A 		4.3
(-3)
A 		27.5
(-0.8)
A 		32.9
(-0.3)
A 		64
avr 46.1
(3) 		8.7
(-2.4) 		13.8
(-1.7) 		4.9
(-3) 		18.8
(-1) 		16.3
(-1.3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 15.9
(3)
A 		1.9
(-2.8)
A 		11.5
(1.2)
A 		1.3
(-3)
A 		15
B 3.4
(-1.8)
A 		12.5
(3)
A 		12
(2.7)
A 		1.2
(-3)
A 		11
C 21.5
(3)
A 		5.4
(-3)
A 		7.1
(-2.4)
A 		6.7
(-2.5)
A 		16
avr 13.6
(3) 		6.6
(-1) 		10.2
(1.1) 		3.1
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 9.2
(3)
A 		3.7
(-1.2)
A 		5
(-0.2)
A 		1.3
(-3)
A 		1.8
(-2.6)
A 		2.9
(-1.8)
A 		8
B 7
(1.3)
A 		2
(-2.5)
A 		1.8
(-2.7)
A 		1.4
(-3)
A 		9.3
(3)
A 		1.5
(-2.9)
A 		8
C 25.4
(3)
A 		2.9
(-2.5)
A 		2.8
(-2.5)
A 		0.9
(-3)
A 		8.9
(-1)
A 		11
(-0.5)
A 		25
avr 13.9
(3) 		2.9
(-2.2) 		3.2
(-2.1) 		1.2
(-3) 		6.7
(-0.4) 		5.1
(-1.2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6349
Sequence Type Exemplar sequence
Representative Public ID F40H6.3 NCBI
Target Description F40H6.3 /REP_DB=WormBase Gene ID /WP=CE01280 /TR=SW:Q20255 /GB=AAA62520.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027822(11), NM_001027823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027822 NCBI Caenorhabditis elegans ZK328.7a (ZK328.7) mRNA, complete cds. 11/11 None
NM_001027823 NCBI Caenorhabditis elegans ZK328.7b (ZK328.7) mRNA, complete cds. 11/11 None
GENEFINDER00000035895 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6034355:6039375:-1 11/11 None
SNAP00000035886 ENSEMBL cdna:SNAP chromosome:CEL140:III:6038390:6039375:-1 11/11 None
ZK328.7a ENSEMBL cdna:known chromosome:CEL140:III:6032685:6039375:-1 gene:ZK328.7 11/11 A 
ZK328.7b ENSEMBL cdna:known chromosome:CEL140:III:6033748:6039412:-1 gene:ZK328.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6038388-6039374(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK328.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91253 Hypothetical protein ZK328.7a [Caenorhabditis elegans] ref|NP_001022993.1| ZK328.7a [Caenorhabditis elegans] sp|Q20255|YSY1_CAEEL Hypothetical protein ZK328.7 in chromosome III 0.0
blast T29012 hypothetical protein ZK328.7 - Caenorhabditis elegans 0.0
blast AAP68919 Hypothetical protein ZK328.7b [Caenorhabditis elegans] ref|NP_001022994.1| ZK328.7b [Caenorhabditis elegans] 0.0
blast CAE64333 Hypothetical protein CBG09016 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 5.1E-6
Pfam IPR001440 EMBL-EBI TPR repeat 0.04
Pfam IPR001440 EMBL-EBI TPR repeat 0.0033
Pfam IPR001440 EMBL-EBI TPR repeat 0.0055
Sequence
Target Sequence 
>C. ELEGANS:187563_AT
gagcactggagagctgtgtccaatgtacattattatgcgagagaaggctattttggcaca
gcaattcttgtgtgcgacgggcggttggctaccataaaagatcctgcacttgcaattctg
aaaggtgtctgtctcactcttctgggaaagattccagatgcaattcgtcatttggaaact
tttgtgactgataacgatgttgctctgggagccctgcatgcgttgaaatgggctcatgca
agtgcttttaacccagataacaaatctatcgtggaaatcgagacagaaatttcaacgcgg
gctagaaatgagaagactccttacacttcgtatgctactgcctctgaggtactctacttt
gccggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCACTGGAGAGCTGTGTCCAATG 642 389 82 Antisense
AGCAATTCTTGTGTGCGACGGGCGG 40 77 141 Antisense
GGTTGGCTACCATAAAAGATCCTGC 20 507 164 Antisense
TGAAAGGTGTCTGTCTCACTCTTCT 135 573 200 Antisense
GATTCCAGATGCAATTCGTCATTTG 94 433 231 Antisense
GATAACGATGTTGCTCTGGGAGCCC 324 423 271 Antisense
GGAGCCCTGCATGCGTTGAAATGGG 607 521 289 Antisense
GGCTCATGCAAGTGCTTTTAACCCA 297 537 312 Antisense
GAAGACTCCTTACACTTCGTATGCT 305 337 393 Antisense
GTATGCTACTGCCTCTGAGGTACTC 126 455 411 Antisense
CTCTGAGGTACTCTACTTTGCCGGG 6 211 423 Antisense
Sequence Source Affymetrix Proprietary Database