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[187562_at]

Description Y54E10BL.1 /REP_DB=WormBase Gene ID /WP=CE22459 /TR=Q9N3D6 /GB=AAF60774.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 4.9
(-3)
A 		68.9
(-0.7)
A 		175.2
(3)
A 		6.9
(-2.9)
A 		170
B 49.4
(-1.7)
A 		155.4
(3)
A 		156.5
(3)
A 		18.9
(-3)
A 		138
C 4.8
(-3)
A 		99.2
(1.1)
A 		142.3
(3)
A 		4.4
(-3)
A 		138
avr 19.7
(-2.6) 		107.8
(1) 		158
(3) 		10.1
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 15.9
(-2.3)
A 		107.8
(3)
A 		16.8
(-2.3)
A 		62.9
(0.4)
A 		4.3
(-3)
A 		31.9
(-1.4)
A 		104
B 46.5
(-0.1)
A 		35.7
(-0.8)
A 		4.7
(-3)
A 		73.7
(1.8)
A 		90.2
(3)
A 		47.3
(-0)
A 		86
C 51.1
(-0.3)
A 		18.6
(-2.4)
A 		102.1
(3)
A 		9.6
(-3)
A 		88.9
(2.1)
A 		56.7
(0.1)
A 		93
avr 37.8
(-3) 		54
(1.2) 		41.2
(-2.1) 		48.7
(-0.2) 		61.1
(3) 		45.3
(-1.1) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 1.8
(-2.9)
A 		15
(-1.1)
A 		45.8
(3)
A 		1
(-3)
A 		45
B 15.8
(-0.9)
A 		38.4
(3)
A 		36.3
(2.6)
A 		4
(-3)
A 		34
C 1.6
(-2.9)
A 		28.5
(0.4)
A 		49.6
(3)
A 		0.7
(-3)
A 		49
avr 6.4
(-2.4) 		27.3
(0.6) 		43.9
(3) 		1.9
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2.9
(-2.7)
A 		38.3
(3)
A 		3.7
(-2.6)
A 		16
(-0.6)
A 		1.3
(-3)
A 		7.8
(-1.9)
A 		37
B 16.2
(-0.4)
A 		11.9
(-1.2)
A 		1.1
(-3)
A 		19.5
(0.1)
A 		36.6
(3)
A 		17.7
(-0.2)
A 		36
C 19
(0.8)
A 		5.7
(-2.2)
A 		26
(2.4)
A 		1.9
(-3)
A 		28.8
(3)
A 		19
(0.8)
A 		27
avr 12.7
(-1.8) 		18.6
(1.2) 		10.3
(-3) 		12.5
(-1.9) 		22.2
(3) 		14.8
(-0.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187562_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.153
Sequence Type Exemplar sequence
Representative Public ID Y54E10BL.1 NCBI
Target Description Y54E10BL.1 /REP_DB=WormBase Gene ID /WP=CE22459 /TR=Q9N3D6 /GB=AAF60774.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058688(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058688 NCBI Caenorhabditis elegans Y54E10BL.1 (Y54E10BL.1) mRNA, complete cds. 9/11 None
GENEFINDER00000040897 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3012092:3012445:1 11/11 None
Y54E10BL.1 ENSEMBL cdna:known chromosome:CEL140:I:3012112:3012441:1 gene:Y54E10BL.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3012091-3012445(+) 91.13 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E10BL.1
Entrez Gene 190262 Entrez gene
SwissProt Q7Z147 EMBL-EBI
WormBase CE34409 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68913 Hypothetical protein Y54E10BL.1 [Caenorhabditis elegans] ref|NP_491089.2| Y54E10BL.1 [Caenorhabditis elegans] 2.0E-40
Sequence
Target Sequence 
>C. ELEGANS:187562_AT
atgggacagcggacagacaccacgtacggagttgctggagagcaggccaggaacctctgg
aaagacggacttccaggtgctgggaagaaggacggagcttcaggatcacaaggatcatcc
ggaccatcggcagagcctggagcacttctcccaggaggagggcaagccgaataccaggat
tgtgcgagcactgcccaccagcgagctcagggaccgccaggaaccatagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGACAGCGGACAGACACCACGT 220 51 13 Antisense
GACACCACGTACGGAGTTGCTGGAG 483 365 28 Antisense
GCTGGAGAGCAGGCCAGGAACCTCT 128 295 46 Antisense
CAGGAACCTCTGGAAAGACGGACTT 653 203 60 Antisense
GACGGACTTCCAGGTGCTGGGAAGA 173 377 76 Antisense
AAGAAGGACGGAGCTTCAGGATCAC 305 151 97 Antisense
GATCACAAGGATCATCCGGACCATC 192 419 116 Antisense
GAGCACTTCTCCCAGGAGGAGGGCA 112 391 152 Antisense
GGAGGGCAAGCCGAATACCAGGATT 193 517 169 Antisense
TACCAGGATTGTGCGAGCACTGCCC 113 651 184 Antisense
TCAGGGACCGCCAGGAACCATAGAA 436 623 219 Antisense
Sequence Source Affymetrix Proprietary Database