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[187560_at]

Description T16H12.2 /REP_DB=WormBase Gene ID /WP=CE00323 /TR=SW:P34565 /GB=CAA83135.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 2.3
(-3)
A 		5.1
(-2.9)
A 		4
(-2.9)
A 		118.1
(3)
P 		116
B 8.1
(-0.6)
A 		2.1
(-3)
A 		14.7
(2.1)
A 		17
(3)
A 		15
C 4.4
(-3)
A 		16.9
(-2.6)
A 		9.2
(-2.8)
A 		172.9
(3)
P 		169
avr 4.9
(-3) 		8
(-2.8) 		9.3
(-2.7) 		102.7
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 1.7
(-3)
A 		11.4
(-1.1)
A 		6.8
(-2)
A 		1.5
(-3)
A 		32.1
(3)
A 		28.4
(2.3)
A 		31
B 1.9
(-2.9)
A 		1.6
(-3)
A 		4
(-2.4)
A 		27.7
(3)
A 		22.8
(1.9)
A 		19.7
(1.2)
A 		26
C 16.8
(-1.9)
A 		13.2
(-2.4)
A 		9.5
(-2.9)
A 		11.8
(-2.6)
A 		9
(-3)
A 		50.3
(3)
P 		41
avr 6.8
(-3) 		8.7
(-2.6) 		6.8
(-3) 		13.7
(-1.4) 		21.3
(0.3) 		32.8
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 0.8
(-3)
A 		1.1
(-2.9)
A 		1
(-2.9)
A 		17.3
(3)
P 		17
B 2.6
(1.1)
A 		0.5
(-3)
A 		3.4
(2.6)
A 		3.6
(3)
A 		3
C 1.4
(-3)
A 		4.9
(-2.2)
A 		3.2
(-2.6)
A 		29.1
(3)
P 		28
avr 1.6
(-3) 		2.2
(-2.8) 		2.5
(-2.6) 		16.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.3
(-3)
A 		4.1
(-0.6)
A 		1.5
(-2.2)
A 		0.4
(-2.9)
A 		9.7
(3)
A 		6.9
(1.2)
A 		9
B 0.7
(-2.9)
A 		0.5
(-3)
A 		1
(-2.7)
A 		7.3
(1.6)
A 		9.3
(3)
A 		7.4
(1.7)
A 		9
C 6.2
(-1.4)
A 		4
(-2.3)
A 		2.4
(-3)
A 		2.4
(-3)
A 		2.9
(-2.8)
A 		16.8
(3)
P 		14
avr 2.4
(-2.5) 		2.9
(-2.1) 		1.6
(-3) 		3.4
(-1.8) 		7.3
(0.9) 		10.4
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7701
Sequence Type Exemplar sequence
Representative Public ID T16H12.2 NCBI
Target Description T16H12.2 /REP_DB=WormBase Gene ID /WP=CE00323 /TR=SW:P34565 /GB=CAA83135.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066837(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066837 NCBI Caenorhabditis elegans T16H12.2 (T16H12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000013077 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10086191:10086948:1 11/11 None
T16H12.2 ENSEMBL cdna:known chromosome:CEL140:III:10086191:10086948:1 gene:T16H12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013068 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10086186-10086944(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16H12.2
Entrez Gene 188559 Entrez gene
SwissProt P34565 EMBL-EBI
WormBase CE00323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83135 Hypothetical protein T16H12.2 [Caenorhabditis elegans] ref|NP_499238.1| T16H12.2 [Caenorhabditis elegans] sp|P34565|YNV2_CAEEL Hypothetical protein T16H12.2 in chromosome III 9.0E-91
Sequence
Target Sequence 
>C. ELEGANS:187560_AT
aggaggcccattatgctatttttgcaacaagaatcatgtcccttcactgtgtagaacgta
cccagacggaatttctcgtcagaaaagtttggaaaatcaaggaaaatgcatcaaatgtct
caaaattggccaccaaaacggagacaatttttgcgaaaaacatcacattgtgtgtagaac
ttgccaacaatcacatgtgaaggcagtttgtccaattttatatccgaaaaaggacactcc
acctaaaatattgcgggctcgcagacgttctctaattcgtgcacagaagaaaaaagactt
ccaggagccagaaaacaagcacgagcaacttacgagcacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGGCCCATTATGCTATTTTTGC 697 53 183 Antisense
GCAACAAGAATCATGTCCCTTCACT 335 319 206 Antisense
GTCCCTTCACTGTGTAGAACGTACC 236 475 220 Antisense
GAACGTACCCAGACGGAATTTCTCG 228 347 236 Antisense
AAATGTCTCAAAATTGGCCACCAAA 51 121 295 Antisense
GAACTTGCCAACAATCACATGTGAA 210 351 359 Antisense
GGCAGTTTGTCCAATTTTATATCCG 280 537 384 Antisense
GGACACTCCACCTAAAATATTGCGG 77 525 414 Antisense
ATATTGCGGGCTCGCAGACGTTCTC 34 19 430 Antisense
AGACGTTCTCTAATTCGTGCACAGA 420 71 445 Antisense
AGCACGAGCAACTTACGAGCACAAA 119 77 500 Antisense
Sequence Source Affymetrix Proprietary Database