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[187559_at]

Description D1044.5 /REP_DB=WormBase Gene ID /WP=CE01208 /TR=SW:P41953 /GB=AAA50737.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 3.4
(-3)
A 		5.8
(-2.8)
A 		14.8
(-2)
A 		69.5
(3)
A 		66
B 10.8
(-3)
A 		44.7
(2.1)
A 		37.5
(1)
A 		50.4
(3)
A 		40
C 22.9
(-0.9)
A 		34
(0.5)
A 		6.6
(-3)
A 		53.6
(3)
A 		47
avr 12.4
(-3) 		28.2
(-0.9) 		19.6
(-2) 		57.8
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 61.4
(3)
A 		12.7
(-2.1)
A 		42.9
(1.1)
A 		3.9
(-3)
A 		50.1
(1.8)
A 		36.1
(0.4)
A 		58
B 22.5
(1.9)
A 		12.5
(-1)
A 		16
(0)
A 		9.1
(-1.9)
A 		26.6
(3)
A 		5.2
(-3)
A 		21
C 16
(0.6)
A 		19
(1.6)
A 		8.9
(-1.6)
A 		23.7
(3)
A 		4.2
(-3)
A 		5.2
(-2.7)
A 		20
avr 33.3
(3) 		14.7
(-2.3) 		22.6
(-0) 		12.2
(-3) 		27
(1.2) 		15.5
(-2.1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-3)
A 		1.3
(-2.9)
A 		3.9
(-1.2)
A 		10.2
(3)
A 		9
B 3.5
(-3)
A 		11
(3)
A 		8.7
(1.2)
A 		10.7
(2.8)
A 		8
C 7.6
(1.2)
A 		9.8
(3)
A 		2.3
(-3)
A 		9
(2.4)
A 		8
avr 4.1
(-3) 		7.4
(0.4) 		5
(-2.1) 		10
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 11.3
(1.4)
A 		4.5
(-1.5)
A 		9.3
(0.5)
A 		1
(-3)
A 		15.1
(3)
A 		8.8
(0.3)
A 		14
B 7.8
(1)
A 		4.2
(-1.4)
A 		3.9
(-1.7)
A 		2.4
(-2.7)
A 		10.8
(3)
A 		1.9
(-3)
A 		9
C 5.9
(3)
A 		5.8
(2.9)
A 		2.3
(-1.8)
A 		4.8
(1.5)
A 		1.4
(-3)
A 		1.7
(-2.6)
A 		5
avr 8.3
(2.3) 		4.8
(-1) 		5.2
(-0.7) 		2.7
(-3) 		9.1
(3) 		4.1
(-1.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6995
Sequence Type Exemplar sequence
Representative Public ID D1044.5 NCBI
Target Description D1044.5 /REP_DB=WormBase Gene ID /WP=CE01208 /TR=SW:P41953 /GB=AAA50737.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065779 NCBI Caenorhabditis elegans D1044.5 (D1044.5) mRNA, complete cds. 11/11 None
D1044.5 ENSEMBL cdna:known chromosome:CEL140:III:5524136:5524394:-1 gene:D1044.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5524134-5524393(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1044.5
Entrez Gene 183907 Entrez gene
SwissProt P41953 EMBL-EBI
WormBase CE01208 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50737 Hypothetical protein D1044.5 [Caenorhabditis elegans] ref|NP_498180.1| D1044.5 [Caenorhabditis elegans] sp|P41953|YLK5_CAEEL Hypothetical protein D1044.5 in chromosome III 5.0E-34
Sequence
Target Sequence 
>C. ELEGANS:187559_AT
tagaggtggagggtcgatccgcaactgtaggctcgcccaaaagtgggacgactcatttcg
acctattgccacctctatccatggcggacccgaaaaaggacatatggagtctaatcctgt
tttgaatatacatgtccccttttttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGAGGTGGAGGGTCGATCCGCAAC 282 651 18 Antisense
CGCAACTGTAGGCTCGCCCAAAAGT 8 209 37 Antisense
GGCTCGCCCAAAAGTGGGACGACTC 599 537 47 Antisense
AAGTGGGACGACTCATTTCGACCTA 706 429 58 Antisense
TGGGACGACTCATTTCGACCTATTG 561 553 61 Antisense
CTCTATCCATGGCGGACCCGAAAAA 82 231 90 Antisense
GGCGGACCCGAAAAAGGACATATGG 500 541 100 Antisense
GGACATATGGAGTCTAATCCTGTTT 358 525 115 Antisense
GGAGTCTAATCCTGTTTTGAATATA 263 515 123 Antisense
GTTTTGAATATACATGTCCCCTTTT 7 449 136 Antisense
TGAATATACATGTCCCCTTTTTTAC 29 577 140 Antisense
Sequence Source Affymetrix Proprietary Database