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[187556_s_at]

Description T09B4.9 /REP_DB=WormBase Gene ID /WP=CE13473 /TR=SW:O02161 /GB=AAB53011.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 41      6grp_total > 23      4grp_total > 51      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 702
1 2 3 4 range
A 824.1
(0.1)
P 		1046.2
(3)
P 		774
(-0.6)
P 		591.6
(-3)
P 		455
B 743.2
(-1.5)
P 		1083.7
(3)
P 		812
(-0.6)
P 		625.6
(-3)
P 		458
C 813.4
(-1)
P 		1282.7
(3)
P 		1024
(0.8)
P 		580.3
(-3)
P 		702
avr 793.6
(-0.8) 		1137.5
(3) 		870
(0) 		599.2
(-3) 		538

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 752.9
(0.4)
P 		833.3
(1.7)
P 		915.9
(3)
P 		854.8
(2)
P 		545.1
(-3)
P 		665.1
(-1.1)
P 		371
B 794.5
(1.5)
P 		854.8
(3)
P 		781.4
(1.2)
P 		796.5
(1.6)
P 		607.9
(-3)
P 		662.6
(-1.7)
P 		247
C 973.8
(3)
P 		845.8
(1.1)
P 		797.8
(0.4)
P 		754
(-0.3)
P 		572.7
(-3)
P 		686.4
(-1.3)
P 		401
avr 840.4
(2.9) 		844.6
(3) 		831.7
(2.7) 		801.8
(2) 		575.2
(-3) 		671.4
(-0.9) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 300.1
(3)
P 		227.1
(0.9)
P 		202.3
(0.3)
P 		86.6
(-3)
P 		214
B 237
(1.6)
P 		267.6
(3)
P 		188.2
(-0.5)
P 		133.3
(-3)
P 		134
C 269.3
(0.8)
P 		368.8
(3)
P 		356.9
(2.7)
P 		97.8
(-3)
P 		271
avr 268.8
(2.4) 		287.8
(3) 		249.1
(1.7) 		105.9
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 138.8
(-3)
P 		296.4
(3)
P 		199.5
(-0.7)
P 		216.8
(-0)
P 		164.5
(-2)
P 		161.9
(-2.1)
P 		158
B 276.5
(2.5)
P 		284.5
(3)
P 		189.7
(-3)
P 		211
(-1.7)
P 		247
(0.6)
P 		247.1
(0.6)
P 		95
C 360.9
(3)
P 		258.1
(0.1)
P 		203.1
(-1.5)
P 		151.6
(-3)
P 		185.3
(-2)
P 		229.8
(-0.8)
P 		209
avr 258.7
(1.5) 		279.7
(3) 		197.4
(-2.7) 		193.1
(-3) 		198.9
(-2.6) 		212.9
(-1.6) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187556_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.429
Sequence Type Exemplar sequence
Representative Public ID T09B4.9 NCBI
Target Description T09B4.9 /REP_DB=WormBase Gene ID /WP=CE13473 /TR=SW:O02161 /GB=AAB53011.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059379 NCBI Caenorhabditis elegans T09B4.9 (T09B4.9) mRNA, complete cds. 11/11 None
SNAP00000036041 ENSEMBL cdna:SNAP chromosome:CEL140:I:6186377:6188975:-1 11/11 None
GENEFINDER00000036046 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6186377:6188975:-1 11/11 None
T09B4.9 ENSEMBL cdna:known chromosome:CEL140:I:6186118:6188975:-1 gene:T09B4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6186305-6188904(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09B4.9
Entrez Gene 172302 Entrez gene
SwissProt O02161 EMBL-EBI
WormBase CE13473 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17170_AT mitochondrial import inner membrane translocase subunit TIM44, putative at
ATH1-121501:263939_AT mitochondrial import inner membrane translocase subunit TIM44, putative at
CANINE_2:CFA.17634.1.S1_AT similar to Import inner membrane translocase subunit TIM44, mitochondrial precursor cfa
CANINE_2:CFAAFFX.28089.1.S1_AT similar to Import inner membrane translocase subunit TIM44, mitochondrial precursor cfa
CANINE_2:CFAAFFX.28090.1.S1_S_AT similar to Import inner membrane translocase subunit TIM44, mitochondrial precursor cfa
DROSOPHILA_2:1627354_AT dm
DROSGENOME1:142455_AT dm
DROSOPHILA_2:1640220_A_AT dm
DROSGENOME1:142456_AT dm
CHICKEN:GGAAFFX.218.1.S1_AT similar to Import inner membrane translocase subunit TIM44, mitochondrial precursor gga
CHICKEN:GGAAFFX.218.2.S1_AT similar to Import inner membrane translocase subunit TIM44, mitochondrial precursor gga
CHICKEN:GGAAFFX.218.2.S1_S_AT similar to Import inner membrane translocase subunit TIM44, mitochondrial precursor gga
HG-FOCUS:203093_S_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
HG-U133_PLUS_2:203093_S_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
HG-U133A:203093_S_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
HG-U133A_2:203093_S_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
HG-U133_PLUS_2:203092_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
HG-U133A_2:203092_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
HG-U133A:203092_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
HG-U95AV2:41664_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
HU35KSUBC:RC_AA477833_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
HUGENEFL:X58234_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
U133_X3P:G5454123_3P_A_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
U133_X3P:G4103601_3P_AT translocase of inner mitochondrial membrane 44 homolog (yeast) hs
MOUSE430A_2:1439371_X_AT translocase of inner mitochondrial membrane 44 mm
MOE430A:1439371_X_AT translocase of inner mitochondrial membrane 44 mm
MOUSE430_2:1439371_X_AT translocase of inner mitochondrial membrane 44 mm
MU11KSUBA:U69898_S_AT translocase of inner mitochondrial membrane 44 mm
MU11KSUBB:W77024_S_AT translocase of inner mitochondrial membrane 44 mm
MG-U74AV2:98106_AT translocase of inner mitochondrial membrane 44 mm
MOE430A:1417670_AT translocase of inner mitochondrial membrane 44 mm
MOUSE430A_2:1417670_AT translocase of inner mitochondrial membrane 44 mm
MOUSE430_2:1417670_AT translocase of inner mitochondrial membrane 44 mm
MOE430A:1448801_A_AT translocase of inner mitochondrial membrane 44 mm
MOUSE430A_2:1448801_A_AT translocase of inner mitochondrial membrane 44 mm
MOUSE430_2:1448801_A_AT translocase of inner mitochondrial membrane 44 mm
MG-U74BV2:111605_AT Translocator of inner mitochondrial membrane 44 (Timm44), mRNA mm
MU19KSUBB:TC31297_S_AT Translocator of inner mitochondrial membrane 44 (Timm44), mRNA mm
MU19KSUBB:TC34472_S_AT Translocator of inner mitochondrial membrane 44 (Timm44), mRNA mm
RAE230A:1398261_AT translocator of inner mitochondrial membrane 44 rn
RAT230_2:1398261_AT translocator of inner mitochondrial membrane 44 rn
RG-U34A:RC_AI045558_AT translocator of inner mitochondrial membrane 44 rn
RAE230B:1391940_AT Translocator of inner mitochondrial membrane 44 rn
RAT230_2:1391940_AT Translocator of inner mitochondrial membrane 44 rn
YEAST_2:1776452_AT Peripheral mitochondrial membrane protein involved in mitochondrial protein import, tethers essential chaperone Ssc1p to the translocon channel at the matrix side of the inner membrane Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5744 mitochondrial inner membrane presequence translocase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15450 protein translocase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53011 Hypothetical protein T09B4.9 [Caenorhabditis elegans] ref|NP_491780.1| T09B4.9 [Caenorhabditis elegans] sp|O02161|TIM44_CAEEL Probable import inner membrane translocase subunit TIM44, mitochondrial precursor 0.0
blast CAE67128 Hypothetical protein CBG12550 [Caenorhabditis briggsae] 0.0
blast XP_418174 PREDICTED: similar to Import inner membrane translocase subunit TIM44, mitochondrial precursor [Gallus gallus] 2.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR007379 EMBL-EBI Mitochondrial import inner membrane translocase, subunit Tim44 5.8E-65
Sequence
Target Sequence 
>C. ELEGANS:187556_S_AT
tgaggtttccgaagttctcaccgaaattcacaaaattgacgccaatttcgacaaacaaga
atggctcaggttctgcgagacaaagattattccaaatattttggaagctttcattcgttt
cgatcttgaagttttacaatcatggtgccatgaaagggcctacacacagctatcaacagt
cgtcaaagagtatcagaaaatgcattttagcacaaaagattctcggattattgatatcaa
taaagtagaaatggcaactggaaaaatgatggaacaaggcccagttttgattatttcatt
ccaagtgtacatgatcaatgtgacaaaaaatgccgatggaaaagttgttgaaggagatcc
agataacccgaaacgtattaatcatatctgggttctctgtcgagatgttgaagaatacaa
tccggcacttgcgtggaaacttcttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGTTTCCGAAGTTCTCACCGAA 266 567 810 Antisense
GAATGGCTCAGGTTCTGCGAGACAA 468 333 868 Antisense
GGAAGCTTTCATTCGTTTCGATCTT 480 531 912 Antisense
GAAGTTTTACAATCATGGTGCCATG 237 337 937 Antisense
GAAAGGGCCTACACACAGCTATCAA 344 361 961 Antisense
CACACAGCTATCAACAGTCGTCAAA 16 195 972 Antisense
GATGGAACAAGGCCCAGTTTTGATT 276 407 1077 Antisense
GGAGATCCAGATAACCCGAAACGTA 594 515 1162 Antisense
TAATCATATCTGGGTTCTCTGTCGA 214 635 1188 Antisense
TGAAGAATACAATCCGGCACTTGCG 494 573 1218 Antisense
GGCACTTGCGTGGAAACTTCTTGAA 478 535 1233 Antisense
Sequence Source Affymetrix Proprietary Database