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[187555_at]

Description F40H6.5 /REP_DB=WormBase Gene ID /WP=CE01937 /TR=SW:Q09277 /GB=AAA62522.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 24.3
(-3)
A 		37.2
(-2.3)
A 		50.6
(-1.5)
A 		132.8
(3)
A 		109
B 61
(3)
A 		43.5
(-1.5)
A 		38.9
(-2.7)
A 		37.9
(-3)
A 		23
C 30.3
(-3)
A 		68.2
(0.8)
A 		52.5
(-0.8)
A 		90.5
(3)
A 		60
avr 38.5
(-3) 		49.6
(-1.6) 		47.3
(-1.9) 		87.1
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 35.9
(-1.1)
A 		37.3
(-0.9)
A 		23.7
(-3)
A 		62.3
(3)
A 		39.8
(-0.5)
A 		50.4
(1.2)
A 		39
B 44.4
(1.5)
A 		55.8
(3)
A 		27.4
(-0.7)
A 		9.9
(-3)
A 		20.9
(-1.6)
A 		14.3
(-2.4)
A 		46
C 22.5
(-1.9)
A 		58.6
(3)
A 		43.7
(1)
A 		14
(-3)
A 		34.5
(-0.2)
A 		19.5
(-2.3)
A 		45
avr 34.3
(-1.3) 		50.6
(3) 		31.6
(-2.1) 		28.7
(-2.8) 		31.7
(-2) 		28.1
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.9
(-2.6)
A 		8.1
(-3)
A 		13.2
(-0.3)
A 		19.4
(3)
A 		11
B 19.5
(3)
A 		10.7
(-1.6)
A 		9
(-2.5)
A 		8.1
(-3)
A 		11
C 10
(-3)
A 		19.6
(3)
A 		18.3
(2.2)
A 		15.3
(0.3)
A 		10
avr 12.8
(-3) 		12.8
(-3) 		13.5
(-0.2) 		14.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.6
(-2.2)
A 		13.3
(1.6)
A 		5.2
(-3)
A 		15.8
(3)
A 		12
(0.8)
A 		12.3
(1)
A 		11
B 15.4
(1.8)
A 		18.6
(3)
A 		6.6
(-1.5)
A 		2.6
(-3)
A 		8.5
(-0.8)
A 		5.3
(-2)
A 		16
C 8.3
(-0.8)
A 		17.9
(3)
A 		11.1
(0.3)
A 		2.8
(-3)
A 		11.2
(0.3)
A 		6.5
(-1.5)
A 		15
avr 10.1
(-1.1) 		16.6
(3) 		7.6
(-2.7) 		7.1
(-3) 		10.6
(-0.8) 		8
(-2.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7559
Sequence Type Exemplar sequence
Representative Public ID F40H6.5 NCBI
Target Description F40H6.5 /REP_DB=WormBase Gene ID /WP=CE01937 /TR=SW:Q09277 /GB=AAA62522.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065917(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065917 NCBI Caenorhabditis elegans F40H6.5 (F40H6.5) mRNA, complete cds. 11/11 None
F40H6.5 ENSEMBL cdna:known chromosome:CEL140:III:6048695:6055747:-1 gene:F40H6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035889 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035894 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6048693-6055746(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40H6.5
Entrez Gene 185576 Entrez gene
SwissProt Q09277 EMBL-EBI
WormBase CE01937 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62522 Hypothetical protein F40H6.5 [Caenorhabditis elegans] ref|NP_498318.1| F40H6.5 [Caenorhabditis elegans] sp|Q09277|YPX5_CAEEL Hypothetical protein F40H6.5 in chromosome III 0.0
blast AAA62519 Hypothetical protein F40H6.2 [Caenorhabditis elegans] ref|NP_498316.1| F40H6.2 [Caenorhabditis elegans] sp|Q20256|YPX2_CAEEL Hypothetical protein F40H6.2 in chromosome III 1.0E-177
blast CAE64407 Hypothetical protein CBG09099 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 9.9E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498318.1 1 5-27
F40H6.5 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:187555_AT
aactactacttcaacattaccttcgacttcaacagctatagcaactactgatgtttcaac
aaggcctcggtcgtgtgacatcaattcaatcacacttggagaaggtgacgcaaatacccc
acaacttcaacttgatgctgttcttggagaatcaagcggctcgtctctctccatttactg
tcgtggacttccaaattacagtatatacatgatgttcaatgttaatcaaggaggaccacc
acctgtcatagatggatatttggaaataactctggattgtctgcctgatagtgaaggtgt
ttggacatttggagggagagagatcacagctatttcatgtttccaagcacctaatagttt
tttacagaaaaaattgcaggtgttccacgtttgtaccaagtttctggaggtcagtagatc
taccaattttgtcacctacgtccagggtcgtcatgttgctaacttggcagtgactcctca
cacatctgaactccacttaacccccacattcgtccaaaacattgccacaatcgacgggtg
gatcgtctcaatttgcatctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTACTACTTCAACATTACCTTCG 258 137 3036 Antisense
ATTACCTTCGACTTCAACAGCTATA 58 13 3051 Antisense
TTTCAACAAGGCCTCGGTCGTGTGA 347 671 3089 Antisense
GGACCACCACCTGTCATAGATGGAT 305 523 3268 Antisense
ATAACTCTGGATTGTCTGCCTGATA 391 25 3301 Antisense
TGCAGGTGTTCCACGTTTGTACCAA 596 575 3410 Antisense
TCTACCAATTTTGTCACCTACGTCC 76 613 3454 Antisense
TACGTCCAGGGTCGTCATGTTGCTA 708 647 3472 Antisense
TAACTTGGCAGTGACTCCTCACACA 617 639 3495 Antisense
CCCCACATTCGTCCAAAACATTGCC 337 261 3537 Antisense
TGGATCGTCTCAATTTGCATCTGCC 157 551 3574 Antisense
Sequence Source Affymetrix Proprietary Database