[Home] | [Total List]

[187553_at]

Description D1044.4 /REP_DB=WormBase Gene ID /WP=CE01207 /TR=SW:P41952 /GB=AAA50736.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 6.1
(-2)
A 		5
(-2.3)
A 		2.7
(-3)
A 		22.7
(3)
A 		20
B 6.2
(-0.9)
A 		16.1
(3)
A 		1
(-3)
A 		3.5
(-2)
A 		15
C 12.1
(-1.4)
A 		10.8
(-1.6)
A 		1.7
(-3)
A 		41.2
(3)
A 		40
avr 8.1
(-1.2) 		10.6
(-0.4) 		1.8
(-3) 		22.5
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 19.4
(3)
A 		7.6
(-0.8)
A 		1.3
(-2.8)
A 		3
(-2.2)
A 		0.6
(-3)
A 		15
(1.6)
A 		19
B 15.8
(1.3)
A 		11.6
(0.1)
A 		8.8
(-0.7)
A 		21.8
(3)
A 		2.3
(-2.6)
A 		0.9
(-3)
A 		21
C 7.9
(-2)
A 		40.1
(3)
A 		3.9
(-2.7)
A 		16.4
(-0.7)
A 		13.6
(-1.1)
A 		1.7
(-3)
A 		38
avr 14.4
(0.9) 		19.8
(3) 		4.7
(-3) 		13.7
(0.6) 		5.5
(-2.7) 		5.9
(-2.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.2
(0.5)
A 		1.1
(-2.1)
A 		0.7
(-3)
A 		3.3
(3)
A 		3
B 2
(-0.2)
A 		4
(3)
A 		0.2
(-3)
A 		0.7
(-2.2)
A 		4
C 4
(0.2)
A 		3.1
(-0.7)
A 		0.6
(-3)
A 		7
(3)
A 		6
avr 2.7
(1.1) 		2.7
(1.1) 		0.5
(-3) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.6
(3)
A 		2.7
(1.4)
A 		0.3
(-2.8)
A 		0.8
(-1.9)
A 		0.2
(-3)
A 		3.6
(3)
A 		3
B 5.5
(2.7)
A 		3.8
(0.8)
A 		2.1
(-1)
A 		5.8
(3)
A 		1
(-2.2)
A 		0.3
(-3)
A 		6
C 2.9
(-1.8)
A 		12.2
(3)
A 		1
(-2.8)
A 		3.3
(-1.6)
A 		4.4
(-1)
A 		0.6
(-3)
A 		12
avr 4
(0.4) 		6.2
(3) 		1.1
(-3) 		3.3
(-0.4) 		1.9
(-2.1) 		1.5
(-2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187553_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6894
Sequence Type Exemplar sequence
Representative Public ID D1044.4 NCBI
Target Description D1044.4 /REP_DB=WormBase Gene ID /WP=CE01207 /TR=SW:P41952 /GB=AAA50736.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065778 NCBI Caenorhabditis elegans D1044.4 (D1044.4) mRNA, complete cds. 11/11 None
D1044.4 ENSEMBL cdna:known chromosome:CEL140:III:5521674:5521985:-1 gene:D1044.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5521672-5521984(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1044.4
Entrez Gene 183906 Entrez gene
SwissProt P41952 EMBL-EBI
WormBase CE01207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50736 Hypothetical protein D1044.4 [Caenorhabditis elegans] ref|NP_498179.1| D1044.4 [Caenorhabditis elegans] sp|P41952|YLK4_CAEEL Hypothetical protein D1044.4 in chromosome III 5.0E-60
Sequence
Target Sequence 
>C. ELEGANS:187553_AT
atgcaacaaaatatccgaatccaaaaaaatcaatacgacacggccactcatccgactgct
tcttctaccacttggaaatatgtcacttatgacgaaacaagcgaaactttcggaatgagc
gagcaggtcgccgacccctgcaaccactgtccgaagccacgcaattataattcggaatgc
aaagacgaagacgtggagaagcatttcgagaaggtcatgccatgtgtacatacttatacc
attatttatggaaacgtacaccacctaccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAACAAAATATCCGAATCCAAA 367 43 13 Antisense
AAATCAATACGACACGGCCACTCAT 534 117 39 Antisense
CTACCACTTGGAAATATGTCACTTA 383 225 77 Antisense
TGTCACTTATGACGAAACAAGCGAA 414 555 93 Antisense
AGCGAAACTTTCGGAATGAGCGAGC 54 83 112 Antisense
GGAATGAGCGAGCAGGTCGCCGACC 563 531 124 Antisense
CACTGTCCGAAGCCACGCAATTATA 38 185 157 Antisense
GAAGACGTGGAGAAGCATTTCGAGA 584 339 199 Antisense
ATTTCGAGAAGGTCATGCCATGTGT 434 17 215 Antisense
GCCATGTGTACATACTTATACCATT 586 279 231 Antisense
TATGGAAACGTACACCACCTACCTA 359 651 259 Antisense
Sequence Source Affymetrix Proprietary Database