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[187552_s_at]

Description C45G9.4 /REP_DB=WormBase Gene ID /WP=CE01855 /TR=SW:Q09505 /GB=AAA62556.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 31      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 60.3
(-0.5)
A 		22.7
(-3)
A 		65.6
(-0.1)
A 		112.8
(3)
A 		90
B 63.5
(3)
A 		18
(-2.4)
A 		22.1
(-1.9)
A 		13.3
(-3)
A 		50
C 78.3
(3)
A 		18.9
(-2.5)
A 		13.3
(-3)
A 		28.8
(-1.6)
A 		65
avr 67.4
(3) 		19.9
(-3) 		33.7
(-1.3) 		51.6
(1) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 76.4
(-2.8)
A 		62.7
(-3)
A 		95.8
(-2.5)
A 		96.7
(-2.5)
A 		328.7
(0.9)
P 		473.2
(3)
P 		411
B 41.8
(-3)
A 		54.4
(-2.8)
A 		72.6
(-2.5)
A 		91.4
(-2.2)
A 		272.5
(0.5)
P 		435.5
(3)
P 		394
C 65.2
(-2.3)
A 		44
(-2.6)
A 		15.4
(-3)
A 		93.1
(-1.9)
A 		338.3
(1.7)
P 		427.4
(3)
P 		412
avr 61.1
(-2.9) 		53.7
(-3) 		61.3
(-2.9) 		93.7
(-2.4) 		313.2
(1) 		445.4
(3) 		392
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 21.9
(3)
A 		4.9
(-3)
A 		17.2
(1.3)
A 		16.5
(1.1)
A 		17
B 20.2
(3)
A 		4.5
(-2.4)
A 		5.1
(-2.2)
A 		2.8
(-3)
A 		17
C 25.9
(3)
A 		5.4
(-2.8)
A 		4.6
(-3)
A 		4.9
(-2.9)
A 		21
avr 22.7
(3) 		4.9
(-3) 		9
(-1.6) 		8.1
(-1.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 14.1
(-3)
A 		22.3
(-2.5)
A 		20.9
(-2.6)
A 		24.5
(-2.4)
A 		99.2
(2.1)
P 		115.2
(3)
P 		101
B 14.5
(-3)
A 		18.1
(-2.9)
A 		17.6
(-2.9)
A 		24.2
(-2.6)
A 		110.7
(0.9)
P 		162.4
(3)
P 		148
C 24.2
(-2.1)
A 		13.4
(-2.6)
A 		3.9
(-3)
A 		18.7
(-2.4)
A 		109.5
(1.6)
P 		143.1
(3)
P 		139
avr 17.6
(-2.8) 		17.9
(-2.8) 		14.1
(-3) 		22.5
(-2.6) 		106.5
(1.4) 		140.2
(3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187552_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7158
Sequence Type Exemplar sequence
Representative Public ID C45G9.4 NCBI
Target Description C45G9.4 /REP_DB=WormBase Gene ID /WP=CE01855 /TR=SW:Q09505 /GB=AAA62556.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065673(11), NM_065675(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065673 NCBI Caenorhabditis elegans C45G9.9 (C45G9.9) mRNA, complete cds. 11/11 None
NM_065675 NCBI Caenorhabditis elegans C45G9.4 (C45G9.4) mRNA, complete cds. 11/11 None
GENEFINDER00000017862 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5052623:5061841:-1 11/11 None
SNAP00000017856 ENSEMBL cdna:SNAP chromosome:CEL140:III:5054603:5061841:-1 11/11 None
SNAP00000017857 ENSEMBL cdna:SNAP chromosome:CEL140:III:5062666:5063779:1 11/11 None
GENEFINDER00000017871 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5062666:5063779:1 11/11 None
C45G9.9 ENSEMBL cdna:known chromosome:CEL140:III:5054603:5055715:-1 gene:C45G9.9 11/11 None
C45G9.4 ENSEMBL cdna:known chromosome:CEL140:III:5062666:5063779:1 gene:C45G9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5062664-5063778(+) 95.22 100.0
chrIII:5054601-5055714(-) 94.88 99.66
Public Domain and Genome References
Gene Title

Ensembl C45G9.9
C45G9.4
Entrez Gene 175687 Entrez gene
175689 Entrez gene
SwissProt Q09505 EMBL-EBI
Q09507 EMBL-EBI
WormBase CE01855 Wormbase
CE01860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741127 C45G9.10a [Caenorhabditis elegans] gb|AAA62553.1| Hypothetical protein C45G9.10a [Caenorhabditis elegans] sp|Q09281|YQIA_CAEEL Hypothetical protein C45G9.10 in chromosome III 0.0
blast NP_741128 C45G9.10b [Caenorhabditis elegans] gb|AAW30670.1| Hypothetical protein C45G9.10b [Caenorhabditis elegans] 0.0
blast NP_498076 C45G9.4 [Caenorhabditis elegans] gb|AAA62556.1| Hypothetical protein C45G9.4 [Caenorhabditis elegans] sp|Q09505|YQI4_CAEEL Hypothetical protein C45G9.4 in chromosome III 1.0E-90
blast NP_498074 C45G9.9 [Caenorhabditis elegans] gb|AAA62552.1| Hypothetical protein C45G9.9 [Caenorhabditis elegans] sp|Q09507|YQI9_CAEEL Hypothetical protein C45G9.9 in chromosome III 4.0E-89
Sequence
Target Sequence 
>C. ELEGANS:187552_S_AT
tccacaacaagctcaggcttctctccaaaagcccattcaatcaggaattgtggatgctga
tgcaaaggcgaaaacagttgttccaagacctccaacaccaattccaccaactggtgttaa
accggaaccggctcctcgttctgagccgctgtatcagccaagatccgtgtcttccacaac
accaagaacctctgcaacaactggtacaactgaacaaatggtcactgctccagcgaccct
tcctccgccatctgctgaatctaaacatcttccacaagatccgccaggtgatgcttcttc
tcctcgcgtccagagacaatacactgccgagaagtattcaaaagaagatcaagacgatga
tgatcagaaggatctgcgtaaaagtgttgcctatccatctcacaagttcttcatgacaca
atacgtgaaagacgagtgccgtgttcgtcgttgggtgtatgaagattcagttccactgat
gatggaatcaaatatgaagcatatgctcaggatggcaagcaatcgaatcgctgcatgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACAACAAGCTCAGGCTTCTCTC 257 589 276 Antisense
CGTTCTGAGCCGCTGTATCAGCCAA 541 247 412 Antisense
TGTATCAGCCAAGATCCGTGTCTTC 584 559 425 Antisense
TCCGTGTCTTCCACAACACCAAGAA 122 595 439 Antisense
GAACCTCTGCAACAACTGGTACAAC 13 347 461 Antisense
GAACAAATGGTCACTGCTCCAGCGA 119 353 487 Antisense
ACAAGATCCGCCAGGTGATGCTTCT 429 113 549 Antisense
TTCTCCTCGCGTCCAGAGACAATAC 687 691 573 Antisense
GTAAAAGTGTTGCCTATCCATCTCA 526 461 653 Antisense
AAGACGAGTGCCGTGTTCGTCGTTG 453 149 704 Antisense
GCAAGCAATCGAATCGCTGCATGCC 308 321 790 Antisense
Sequence Source Affymetrix Proprietary Database