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[187550_at]

Description R07B7.12 /REP_DB=WormBase Gene ID /WP=CE06274 /TR=SW:Q21802 /GB=CAB00121.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 32.1
(-2.3)
A 		25.4
(-3)
A 		66.4
(1.1)
A 		86.1
(3)
P 		61
B 24.7
(-3)
A 		58.7
(1.1)
A 		45.4
(-0.5)
A 		74.7
(3)
P 		50
C 48.9
(-2.2)
A 		64.3
(-1.3)
M 		33.7
(-3)
A 		144.7
(3)
P 		111
avr 35.2
(-3) 		49.5
(-1.7) 		48.5
(-1.8) 		101.8
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 39.3
(-0.1)
A 		13.1
(-3)
A 		59.8
(2.1)
A 		67.7
(3)
A 		29.1
(-1.2)
A 		26.9
(-1.5)
A 		55
B 27.1
(-0.7)
A 		10
(-3)
A 		23.9
(-1.1)
A 		26.2
(-0.8)
A 		53.9
(3)
P 		37.4
(0.7)
A 		44
C 43
(1.6)
A 		35.1
(0.7)
A 		3.6
(-3)
A 		35.1
(0.7)
A 		55.3
(3)
A 		42.6
(1.5)
P 		52
avr 36.5
(0.8) 		19.4
(-3) 		29.1
(-0.8) 		43
(2.3) 		46.1
(3) 		35.6
(0.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11.7
(0.2)
A 		5.5
(-3)
A 		17.3
(3)
A 		12.6
(0.6)
P 		12
B 7.9
(-3)
A 		14.5
(2)
A 		10.5
(-1.1)
A 		15.9
(3)
P 		8
C 16.2
(-0.9)
A 		18.5
(0.2)
M 		11.7
(-3)
A 		24.4
(3)
P 		13
avr 11.9
(-3) 		12.8
(-2.1) 		13.2
(-1.6) 		17.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.2
(-1.8)
A 		4.7
(-3)
A 		13
(1)
A 		17.2
(3)
A 		8.8
(-1)
A 		6.5
(-2.1)
A 		13
B 9.4
(-1)
A 		3.3
(-3)
A 		5.8
(-2.2)
A 		6.9
(-1.8)
A 		21.9
(3)
P 		14
(0.5)
A 		19
C 15.9
(2.3)
A 		10.7
(0.5)
A 		0.9
(-3)
A 		7.1
(-0.8)
A 		17.9
(3)
A 		14.3
(1.7)
P 		17
avr 10.8
(-0.2) 		6.2
(-3) 		6.6
(-2.8) 		10.4
(-0.5) 		16.2
(3) 		11.6
(0.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12995
Sequence Type Exemplar sequence
Representative Public ID R07B7.12 NCBI
Target Description R07B7.12 /REP_DB=WormBase Gene ID /WP=CE06274 /TR=SW:Q21802 /GB=CAB00121.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073631(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073631 NCBI Caenorhabditis elegans R07B7.12 (R07B7.12) mRNA, complete cds. 11/11 None
SNAP00000027093 ENSEMBL cdna:SNAP chromosome:CEL140:V:12092015:12094381:1 11/11 None
GENEFINDER00000027103 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12091706:12094381:1 11/11 None
R07B7.12 ENSEMBL cdna:known chromosome:CEL140:V:12091661:12094381:1 gene:R07B7.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12091660-12094381(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07B7.12
Entrez Gene 187659 Entrez gene
SwissProt Q21802 EMBL-EBI
WormBase CE06274 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00121 Hypothetical protein R07B7.12 [Caenorhabditis elegans] ref|NP_506032.1| R07B7.12 [Caenorhabditis elegans] sp|Q21802|YEYC_CAEEL Hypothetical protein R07B7.12 in chromosome V 0.0
blast CAB00121 Hypothetical protein R07B7.12 [Caenorhabditis elegans] ref|NP_506032.1| R07B7.12 [Caenorhabditis elegans] sp|Q21802|YEYC_CAEEL Hypothetical protein R07B7.12 in chromosome V 1.0E-177
blast CAE75387 Hypothetical protein CBG23374 [Caenorhabditis briggsae] 1.0E-151
blast CAE75387 Hypothetical protein CBG23374 [Caenorhabditis briggsae] 1.0E-132
blast CAB05705 Hypothetical protein C49A1.5 [Caenorhabditis elegans] ref|NP_493485.1| C49A1.5 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.5E-22
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.7E-97
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506032.1 1 44-66
R07B7.12 1 44-66
GENEFINDER00000027103 1 29-51
Sequence
Target Sequence 
>C. ELEGANS:187550_AT
ttttcatttcgtcacttgttctcaaatatgaaaattcaagaagagactggttatggaaag
tcaattgttaatccattgaagtacaattccacgtggattcatcactcaatgaaattgcca
agaaataagatgttaaaaataatgaatacggaaataattcacatcaagaatattttggat
tccgaattaaacaaagatgcaccaatccacttaccgataatttatggaacggaaactgaa
tcagttattcgagaaatggatttgaaaactctcgattttgattttcagactgtctatcaa
aatccaatctatagagaagctgcacttaaaatgattgattataacttctacactccaatt
gttttcaattgctacaatgaatcgttttatcatccatattttgtcgagaaaaaagacttt
agtcaaatttgtccaaatgcagataactgtcagctacctcagcgagaagatatcaaatgc
attcattcagatggagaatatgtttctggtccagaaatgtacccgatcactttccattat
gcagttcatccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCATTTCGTCACTTGTTCTCAA 564 675 1081 Antisense
CAAAGATGCACCAATCCACTTACCG 10 193 1272 Antisense
GCACCAATCCACTTACCGATAATTT 16 313 1279 Antisense
CTCGATTTTGATTTTCAGACTGTCT 449 233 1351 Antisense
GACTGTCTATCAAAATCCAATCTAT 483 375 1368 Antisense
GATTGATTATAACTTCTACACTCCA 233 435 1413 Antisense
ACTTCTACACTCCAATTGTTTTCAA 618 101 1424 Antisense
GAATCGTTTTATCATCCATATTTTG 485 329 1459 Antisense
ATAACTGTCAGCTACCTCAGCGAGA 471 25 1523 Antisense
GAAATGTACCCGATCACTTTCCATT 141 361 1594 Antisense
ACTTTCCATTATGCAGTTCATCCAT 441 101 1609 Antisense
Sequence Source Affymetrix Proprietary Database