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[187548_s_at]

Description C32D5.6 /REP_DB=WormBase Gene ID /WP=CE01846 /TR=SW:Q09266 /GB=AAC46794.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 61      6grp_total > 12      4grp_total > 46      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 688
1 2 3 4 range
A 873.3
(3)
P 		626.9
(0.4)
P 		408
(-2)
P 		315
(-3)
P 		558
B 986.3
(3)
P 		593.2
(-0.6)
P 		378.7
(-2.5)
P 		328.6
(-3)
P 		658
C 925.4
(3)
P 		505.9
(-1)
P 		454.6
(-1.5)
P 		298.5
(-3)
P 		627
avr 928.3
(3) 		575.3
(-0.4) 		413.8
(-2) 		314
(-3) 		614

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 439
1 2 3 4 5 6 range
A 572.5
(1.2)
P 		687.6
(3)
P 		472.4
(-0.4)
P 		433.7
(-1)
P 		327.2
(-2.7)
P 		306.3
(-3)
P 		381
B 428.4
(-0.4)
P 		660.1
(3)
P 		465.6
(0.2)
P 		279.6
(-2.5)
P 		380.4
(-1.1)
P 		248.3
(-3)
P 		412
C 503.6
(0.3)
P 		673.9
(3)
P 		579
(1.5)
P 		467.3
(-0.2)
P 		290.2
(-3)
P 		297.7
(-2.9)
P 		384
avr 501.5
(0.3) 		673.9
(3) 		505.7
(0.4) 		393.5
(-1.3) 		332.6
(-2.3) 		284.1
(-3) 		390
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 318
(3)
P 		136.1
(-1)
P 		106.7
(-1.7)
P 		46.1
(-3)
P 		272
B 314.5
(3)
P 		146.5
(-1.1)
P 		87.7
(-2.6)
P 		70
(-3)
P 		245
C 306.3
(3)
P 		145.4
(-0.8)
P 		158.4
(-0.5)
P 		50.3
(-3)
P 		256
avr 312.9
(3) 		142.7
(-1) 		117.6
(-1.6) 		55.5
(-3) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 105.5
(-1.9)
P 		244.6
(3)
P 		102.9
(-2)
P 		110
(-1.8)
P 		98.7
(-2.1)
P 		74.6
(-3)
P 		170
B 149.1
(0.1)
P 		219.7
(3)
P 		113.1
(-1.4)
P 		74.1
(-3)
P 		154.6
(0.3)
P 		92.6
(-2.2)
P 		146
C 186.7
(2)
P 		205.6
(3)
P 		147.4
(-0.1)
P 		94
(-3)
P 		93.9
(-3)
P 		99.7
(-2.7)
P 		112
avr 147.1
(-0.4) 		223.3
(3) 		121.1
(-1.6) 		92.7
(-2.8) 		115.7
(-1.8) 		89
(-3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187548_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4317
Sequence Type Exemplar sequence
Representative Public ID C32D5.6 NCBI
Target Description C32D5.6 /REP_DB=WormBase Gene ID /WP=CE01846 /TR=SW:Q09266 /GB=AAC46794.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062872 NCBI Caenorhabditis elegans C32D5.6 (C32D5.6) mRNA, complete cds. 11/11 None
SNAP00000026828 ENSEMBL cdna:SNAP chromosome:CEL140:II:6331924:6333913:-1 11/11 None
GENEFINDER00000026844 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6331924:6333913:-1 11/11 None
C32D5.6 ENSEMBL cdna:known chromosome:CEL140:II:6331860:6333913:-1 gene:C32D5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6331920-6333910(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32D5.6
Entrez Gene 174046 Entrez gene
SwissProt Q09266 EMBL-EBI
WormBase CE01846 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600719_AT similar to C32D5.6 cfa
CANINE_2:CFA.4775.1.A1_AT similar to C32D5.6 cfa
CANINE_2:CFA.4775.1.A1_S_AT similar to C32D5.6 cfa
CANINE_2:CFAAFFX.3212.1.S1_S_AT similar to C32D5.6 cfa
CHICKEN:GGAAFFX.3403.1.S1_AT similar to hypothetical protein FLJ33868 gga
HU35KSUBD:RC_AA398910_AT chromosome 9 open reading frame 52 hs
HU35KSUBD:RC_AA292721_AT chromosome 9 open reading frame 52 hs
U133_X3P:HS.282127.0.A1_3P_AT chromosome 9 open reading frame 52 hs
HG-U133_PLUS_2:242477_AT chromosome 9 open reading frame 52 hs
HG-U133B:242477_AT chromosome 9 open reading frame 52 hs
HG-U95B:59282_AT chromosome 9 open reading frame 52 hs
HG-U133_PLUS_2:236826_AT Chromosome 9 open reading frame 52 hs
HG-U133B:236826_AT Chromosome 9 open reading frame 52 hs
HG-U133_PLUS_2:232000_AT Chromosome 9 open reading frame 52 hs
HG-U133B:232000_AT Chromosome 9 open reading frame 52 hs
HU35KSUBC:RC_AA485425_AT Chromosome 9 open reading frame 52 hs
U133_X3P:HS.48919.0.S1_3P_X_AT Chromosome 9 open reading frame 52 hs
U133_X3P:HS.49605.0.A1_3P_AT Chromosome 9 open reading frame 52 hs
HG-U95B:45071_AT Chromosome 9 open reading frame 52 hs
HG-U95B:46858_AT Chromosome 9 open reading frame 52 hs
HG-U133_PLUS_2:241339_AT Chromosome 9 open reading frame 52 hs
HG-U133B:241339_AT Chromosome 9 open reading frame 52 hs
HG-U95D:82888_AT Chromosome 9 open reading frame 52 hs
HG-U95D:84116_AT Chromosome 9 open reading frame 52 hs
HU35KSUBD:RC_T95590_AT Chromosome 9 open reading frame 52 hs
HU35KSUBC:RC_N69066_AT Chromosome 9 open reading frame 52 hs
U133_X3P:HS.281943.0.A1_3P_AT Chromosome 9 open reading frame 52 hs
MOE430A:1453392_AT RIKEN cDNA 1810054D07 gene mm
MOUSE430A_2:1453392_AT RIKEN cDNA 1810054D07 gene mm
MOUSE430_2:1453392_AT RIKEN cDNA 1810054D07 gene mm
MU11KSUBA:AA213102_S_AT RIKEN cDNA 1810054D07 gene mm
MU11KSUBA:C76819_RC_AT RIKEN cDNA 1810054D07 gene mm
MG-U74AV2:101222_F_AT RIKEN cDNA 1810054D07 gene mm
MG-U74AV2:93462_AT RIKEN cDNA 1810054D07 gene mm
MG-U74AV2:161306_R_AT RIKEN cDNA 1810054D07 gene mm
MOE430A:1440192_AT RIKEN cDNA 1810054D07 gene mm
MOUSE430A_2:1440192_AT RIKEN cDNA 1810054D07 gene mm
MOUSE430_2:1440192_AT RIKEN cDNA 1810054D07 gene mm
MOE430B:1458963_AT RIKEN cDNA 1810054D07 gene mm
MOUSE430_2:1458963_AT RIKEN cDNA 1810054D07 gene mm
MU19KSUBB:TC31284_AT RIKEN cDNA 1810054D07 gene mm
RAE230B:1395879_AT similar to hypothetical protein FLJ33868 (predicted) rn
RAT230_2:1395879_AT similar to hypothetical protein FLJ33868 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC46794 Hypothetical protein C32D5.6 [Caenorhabditis elegans] ref|NP_495273.1| C32D5.6 [Caenorhabditis elegans] sp|Q09266|YQD6_CAEEL Hypothetical protein C32D5.6 in chromosome II 0.0
blast CAE59295 Hypothetical protein CBG02630 [Caenorhabditis briggsae] 0.0
blast NP_001016802 hypothetical protein LOC549556 [Xenopus tropicalis] 1.0E-107
Sequence
Target Sequence 
>C. ELEGANS:187548_S_AT
tcttctttgtatcttctttgctgcagatgaaactgtagaagagggaaggagaaatgagac
aataaatgcattagctggaaaagtggatggtttgagaataagaatagctggaaagtcaat
tcctgttgaaaaatattgtggaaggaaagccaagcgatttacaacaactaattctttgtt
atttgctcattatgagtttatttacttttggaatggttttgatatttttggaaaaaactc
caaaatggttagaggaattgtggaggatatggatcgagtatgggaaatgaaaaaatctac
atgtgatatcgatgattattgtctctattatttcttgaaaggagttgcacttcgtcatct
aagcctacacgcacaagcagaggaatgcttcaaaattgttttagaaagggaatcaagtat
caaaagtttcacatatcttccaccaaatgctacctatgaactagccatgctccgcatctc
agaacaacaatttatggaagcgcagacgttacttgacaaggctcgtgcatacaaatcata
ctctctggagaacaagttacacttccggatacatagcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTTTGTATCTTCTTTGCTGCA 432 617 1134 Antisense
GATTATTGTCTCTATTATTTCTTGA 670 429 1447 Antisense
GAAAGGAGTTGCACTTCGTCATCTA 290 361 1470 Antisense
TCGTCATCTAAGCCTACACGCACAA 680 603 1485 Antisense
AAAAGTTTCACATATCTTCCACCAA 26 133 1555 Antisense
CTTCCACCAAATGCTACCTATGAAC 497 219 1570 Antisense
TACCTATGAACTAGCCATGCTCCGC 243 649 1584 Antisense
ATGCTCCGCATCTCAGAACAACAAT 300 43 1600 Antisense
GCGCAGACGTTACTTGACAAGGCTC 257 289 1633 Antisense
GGCTCGTGCATACAAATCATACTCT 641 539 1653 Antisense
GTTACACTTCCGGATACATAGCGCA 180 445 1689 Antisense
Sequence Source Affymetrix Proprietary Database