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[187547_at]

Description C18H9.2 /REP_DB=WormBase Gene ID /WP=CE01802 /TR=SW:Q09237 /GB=AAC46687.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 9.2
(-2.6)
A 		3.9
(-3)
A 		4
(-3)
A 		94.2
(3)
P 		90
B 26.5
(-1.3)
A 		33.5
(-0.6)
A 		9.9
(-3)
A 		69
(3)
A 		59
C 18.4
(-1.9)
A 		5.8
(-3)
A 		9.3
(-2.7)
A 		73.3
(3)
P 		68
avr 18
(-2.1) 		14.4
(-2.4) 		7.7
(-3) 		78.8
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 8.8
(-2.4)
A 		1.8
(-3)
A 		4.5
(-2.8)
A 		25.4
(-1)
A 		71
(3)
A 		4.6
(-2.8)
A 		69
B 5.1
(-2.8)
A 		9.9
(-2.1)
A 		9
(-2.3)
A 		47.7
(3)
A 		3.5
(-3)
A 		23.9
(-0.2)
A 		44
C 43.8
(3)
A 		5.2
(-2.6)
A 		2.2
(-3)
A 		2.6
(-2.9)
A 		5.2
(-2.6)
A 		26
(0.4)
A 		42
avr 19.2
(0.9) 		5.6
(-2.9) 		5.2
(-3) 		25.2
(2.6) 		26.6
(3) 		18.2
(0.6) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.3
(-1.8)
A 		0.8
(-3)
A 		1
(-2.9)
A 		13.8
(3)
P 		13
B 8.5
(0)
A 		8.3
(-0.1)
A 		2.3
(-3)
A 		14.7
(3)
A 		12
C 6.1
(-0.5)
A 		1.7
(-3)
A 		3.3
(-2.1)
A 		12.4
(3)
P 		11
avr 6
(-1) 		3.6
(-2.3) 		2.2
(-3) 		13.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.6
(-2.7)
A 		0.7
(-3)
A 		1
(-2.9)
A 		6.5
(-1.3)
A 		21.4
(3)
A 		1.1
(-2.9)
A 		21
B 1.8
(-2.8)
A 		3.3
(-2)
A 		2.2
(-2.6)
A 		12.6
(3)
A 		1.4
(-3)
A 		8.9
(1)
A 		11
C 16.2
(3)
A 		1.6
(-2.6)
A 		0.6
(-3)
A 		0.5
(-3)
A 		1.7
(-2.5)
A 		8.7
(0.1)
A 		16
avr 6.5
(1.5) 		1.9
(-2.5) 		1.3
(-3) 		6.5
(1.5) 		8.2
(3) 		6.2
(1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4160
Sequence Type Exemplar sequence
Representative Public ID C18H9.2 NCBI
Target Description C18H9.2 /REP_DB=WormBase Gene ID /WP=CE01802 /TR=SW:Q09237 /GB=AAC46687.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062960(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062960 NCBI Caenorhabditis elegans C18H9.2 (C18H9.2) mRNA, complete cds. 11/11 None
C18H9.2 ENSEMBL cdna:known chromosome:CEL140:II:6689995:6691677:1 gene:C18H9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038937 8/11 Cross Hyb Matching Probes None
GENEFINDER00000038944 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6689991-6691674(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18H9.2
Entrez Gene 353398 Entrez gene
SwissProt Q09237 EMBL-EBI
WormBase CE01802 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46687 Hypothetical protein C18H9.2 [Caenorhabditis elegans] ref|NP_495361.1| C18H9.2 [Caenorhabditis elegans] sp|Q09237|YQ82_CAEEL Hypothetical protein C18H9.2 in chromosome II 1.0E-50
blast CAE66041 Hypothetical protein CBG11240 [Caenorhabditis briggsae] 9.0E-37
Sequence
Target Sequence 
>C. ELEGANS:187547_AT
ccccgtctagttgttttcaatggatgccacttcaagcagccgtcgaagatattgtcatgt
cgtacttggacgaatcgaaaactgtgaaggaatttgttcgcgaattcatcaagcgtcgca
ttgcaatgcgtgctgctggaggtcgtccagatgccgacgatttgacttctgctcgtactg
ccgccgctgctccatccgattccaactctggatccaactcgaattctggaaatggtcagg
gcaagaaaaagaagaagactcaaaagcaagttctcgatggaaatattctcggattccgtg
gaactgctgccgctgaccgtcttaacaagggcgaaatcgacgcagtccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCGTCTAGTTGTTTTCAATGGAT 475 259 20 Antisense
AATGGATGCCACTTCAAGCAGCCGT 167 163 38 Antisense
GCAGCCGTCGAAGATATTGTCATGT 277 313 55 Antisense
TTGTTCGCGAATTCATCAAGCGTCG 187 705 113 Antisense
GCATTGCAATGCGTGCTGCTGGAGG 429 307 137 Antisense
GCTGCTGGAGGTCGTCCAGATGCCG 304 297 151 Antisense
AGATGCCGACGATTTGACTTCTGCT 534 67 168 Antisense
CTCCATCCGATTCCAACTCTGGATC 18 237 209 Antisense
ACTCTGGATCCAACTCGAATTCTGG 526 99 224 Antisense
GCCGCTGACCGTCTTAACAAGGGCG 56 285 328 Antisense
CAAGGGCGAAATCGACGCAGTCCCA 103 179 345 Antisense
Sequence Source Affymetrix Proprietary Database