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[187546_at]

Description B0310.1 /REP_DB=WormBase Gene ID /WP=CE03874 /TR=SW:Q10937 /GB=AAA81765.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 53      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 469
1 2 3 4 range
A 439.8
(3)
P 		345.1
(1.6)
P 		244.1
(0.1)
P 		35.9
(-3)
A 		404
B 460.7
(3)
P 		350.7
(1.6)
P 		317.2
(1.1)
P 		4.4
(-3)
A 		456
C 473.2
(3)
P 		334.7
(0.9)
P 		360.5
(1.3)
P 		73.2
(-3)
A 		400
avr 457.9
(3) 		343.5
(1.4) 		307.3
(0.8) 		37.8
(-3) 		420

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 302
(0.6)
P 		404.5
(3)
P 		287.8
(0.2)
P 		263.1
(-0.3)
P 		283.7
(0.1)
P 		150.7
(-3)
P 		254
B 343.4
(1.6)
P 		382.3
(2.5)
P 		403.4
(3)
P 		286.2
(0.3)
P 		233.9
(-1)
P 		146
(-3)
P 		257
C 335
(1.1)
P 		358.1
(1.7)
P 		411.6
(3)
P 		253.7
(-0.9)
P 		206.8
(-2.1)
P 		171.4
(-3)
P 		240
avr 326.8
(1.5) 		381.6
(3) 		367.6
(2.6) 		267.7
(-0) 		241.5
(-0.7) 		156
(-3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 160.1
(3)
P 		74.9
(-0.3)
P 		63.8
(-0.7)
P 		5.3
(-3)
A 		155
B 146.9
(3)
P 		86.6
(0.5)
P 		73.5
(-0)
P 		0.9
(-3)
A 		146
C 156.6
(3)
P 		96.2
(0.5)
P 		125.7
(1.7)
P 		12.3
(-3)
A 		144
avr 154.5
(3) 		85.9
(0.2) 		87.7
(0.3) 		6.2
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 55.7
(-1.9)
P 		143.9
(3)
P 		62.7
(-1.5)
P 		66.7
(-1.3)
P 		85.6
(-0.3)
P 		36.7
(-3)
P 		107
B 119.5
(2.4)
P 		127.3
(3)
P 		98
(0.6)
P 		75.8
(-1.2)
P 		95
(0.3)
P 		54.4
(-3)
P 		73
C 124.2
(3)
P 		109.3
(1.8)
P 		104.7
(1.4)
P 		51
(-3)
P 		66.9
(-1.7)
P 		57.4
(-2.5)
P 		73
avr 99.8
(0.9) 		126.8
(3) 		88.5
(0) 		64.5
(-1.8) 		82.5
(-0.4) 		49.5
(-3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187546_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18434
Sequence Type Exemplar sequence
Representative Public ID B0310.1 NCBI
Target Description B0310.1 /REP_DB=WormBase Gene ID /WP=CE03874 /TR=SW:Q10937 /GB=AAA81765.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075707 NCBI Caenorhabditis elegans B0310.1 (B0310.1) mRNA, complete cds. 11/11 None
SNAP00000007895 ENSEMBL cdna:SNAP chromosome:CEL140:X:493357:497214:1 11/11 None
GENEFINDER00000007906 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:493357:497214:1 11/11 None
B0310.1 ENSEMBL cdna:known chromosome:CEL140:X:493965:496317:1 gene:B0310.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:493964-496317(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0310.1
Entrez Gene 181922 Entrez gene
SwissProt Q10937 EMBL-EBI
WormBase CE03874 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE63657 Hypothetical protein CBG08159 [Caenorhabditis briggsae] 1.0E-143
blast AAA81765 Hypothetical protein B0310.1 [Caenorhabditis elegans] ref|NP_508108.1| B0310.1 [Caenorhabditis elegans] sp|Q10937|YWS1_CAEEL Hypothetical protein B0310.1 in chromosome X 1.0E-127
blast AAA81765 Hypothetical protein B0310.1 [Caenorhabditis elegans] ref|NP_508108.1| B0310.1 [Caenorhabditis elegans] sp|Q10937|YWS1_CAEEL Hypothetical protein B0310.1 in chromosome X 1.0E-118
blast CAE63657 Hypothetical protein CBG08159 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508108.1 4 107-124,139-158,165-184,189-208
B0310.1 4 107-124,139-158,165-184,189-208
SNAP00000007895 4 17-39,131-153,160-182,216-235
GENEFINDER00000007906 4 17-39,131-153,160-182,216-235
Sequence
Target Sequence 
>C. ELEGANS:187546_AT
agcactccttcaacattatggcatcgacttggataaatccgataaatcatttgcttcagg
attgcaaaaatcctttgcaatttccacaacaattggccccctggatgttgacgattttac
aacgttaggcaagctaattgcagtcctttacgcacttataggaaccccgctatttttaac
agttattggccagcttgggaaaatggtgacgtcagtgtggcagggaacaactctttggat
tgtaacaatcgtttacattttcatttccgctgttatttacgatattgtggaagggggatc
ggatgatgtgccatttattgaagcaattttttcgatttttctgcaattcacgacagttgg
agaggtggataatgagtttcacggtgtgcttccctactgcattgtagtgcttggattggc
tcttatcacagcgttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACTCCTTCAACATTATGGCATC 451 77 198 Antisense
AATCCTTTGCAATTTCCACAACAAT 633 167 266 Antisense
GCCCCCTGGATGTTGACGATTTTAC 31 287 293 Antisense
GCAAGCTAATTGCAGTCCTTTACGC 234 321 326 Antisense
TTTACGCACTTATAGGAACCCCGCT 331 1 344 Antisense
TGGTGACGTCAGTGTGGCAGGGAAC 187 553 401 Antisense
AATCGTTTACATTTTCATTTCCGCT 412 165 444 Antisense
GGGGGATCGGATGATGTGCCATTTA 7 499 490 Antisense
TAATGAGTTTCACGGTGTGCTTCCC 287 635 567 Antisense
GTGCTTCCCTACTGCATTGTAGTGC 48 479 583 Antisense
GGATTGGCTCTTATCACAGCGTTAT 61 509 610 Antisense
Sequence Source Affymetrix Proprietary Database