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[187545_at]

Description T19C3.6 /REP_DB=WormBase Gene ID /WP=CE02057 /TR=SW:Q10012 /GB=AAC46597.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 22      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 76.3
(2.2)
A 		9.7
(-2.6)
A 		4.8
(-3)
A 		88.1
(3)
A 		83
B 30.7
(1.8)
A 		6.7
(-2.7)
A 		5.2
(-3)
A 		37.2
(3)
A 		32
C 31.9
(3)
P 		11.3
(-2.1)
A 		7.7
(-3)
A 		29.2
(2.3)
A 		24
avr 46.3
(2.3) 		9.2
(-2.6) 		5.9
(-3) 		51.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 7.3
(-1.6)
A 		16.5
(1.5)
A 		20.8
(3)
A 		8.9
(-1.1)
A 		3.3
(-3)
A 		4.9
(-2.5)
A 		18
B 5.4
(-2.6)
A 		7.6
(-1)
A 		13.4
(3)
A 		6.5
(-1.8)
A 		5.1
(-2.8)
A 		4.8
(-3)
A 		9
C 4.7
(-2.8)
A 		16.1
(-0.9)
A 		40.4
(3)
A 		8.2
(-2.2)
A 		4.8
(-2.7)
A 		3.2
(-3)
A 		37
avr 5.8
(-2.6) 		13.4
(-0.3) 		24.9
(3) 		7.9
(-2) 		4.4
(-3) 		4.3
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 27.8
(3)
A 		2.1
(-2.8)
A 		1.3
(-3)
A 		12.9
(-0.4)
A 		27
B 9.8
(3)
A 		1.7
(-2.7)
A 		1.2
(-3)
A 		7.9
(1.7)
A 		9
C 10.5
(3)
P 		3.2
(-2.6)
A 		2.7
(-3)
A 		4.9
(-1.3)
A 		8
avr 16
(3) 		2.3
(-2.7) 		1.7
(-3) 		8.6
(-0.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-2.5)
A 		5.9
(3)
A 		4.5
(1.3)
A 		2.2
(-1.5)
A 		1
(-3)
A 		1.2
(-2.8)
A 		5
B 1.9
(-2.3)
A 		2.5
(0)
A 		3.3
(3)
A 		1.7
(-3)
A 		2.1
(-1.5)
A 		1.8
(-2.6)
A 		2
C 1.7
(-2.6)
A 		4.9
(-0.5)
A 		10.3
(3)
A 		1.7
(-2.6)
A 		1.6
(-2.7)
A 		1.1
(-3)
A 		9
avr 1.7
(-2.6) 		4.4
(0.9) 		6
(3) 		1.9
(-2.3) 		1.6
(-2.7) 		1.4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187545_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8226
Sequence Type Exemplar sequence
Representative Public ID T19C3.6 NCBI
Target Description T19C3.6 /REP_DB=WormBase Gene ID /WP=CE02057 /TR=SW:Q10012 /GB=AAC46597.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064822(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064822 NCBI Caenorhabditis elegans T19C3.6 (T19C3.6) mRNA, complete cds. 11/11 None
SNAP00000033751 ENSEMBL cdna:SNAP chromosome:CEL140:III:628172:630984:-1 11/11 None
GENEFINDER00000033757 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:628172:630984:-1 11/11 None
T19C3.6 ENSEMBL cdna:known chromosome:CEL140:III:628172:630984:-1 gene:T19C3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:628171-630984(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19C3.6
Entrez Gene 188588 Entrez gene
SwissProt Q10012 EMBL-EBI
WormBase CE32726 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46597 Hypothetical protein T19C3.6 [Caenorhabditis elegans] ref|NP_497223.2| T19C3.6 [Caenorhabditis elegans] sp|Q10012|YSV6_CAEEL Hypothetical protein T19C3.6 in chromosome III 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:187545_AT
ggttacaagtattctgggacggcgagagtatcgtttgctccaaaattcggttaccaagaa
gcatttgtgcaaatttatgggtgtagagttcgactacaatgacttggatgagattaccga
gatccgtgttggggagaatatattcgacacgttcgaatcctacgcaagattcgccatgaa
agacactatgaaaagtatattcgctgaatgcaaggctatgaaaacatgtttggctagaat
tgagagggagaagcagaccgaagcctcaatgaatcacaagatacggcaatgctacatcac
gctccgcagactctgccagctctactacaaattctatcaagacctcgagaagctgaaaat
tcccgaacacgcgtggaatgtgccactcgtcaaaaaagcggaaaagtctattgtggtcct
ggaccatgcaatttataag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTACAAGTATTCTGGGACGGCGA 236 503 21 Antisense
GACGGCGAGAGTATCGTTTGCTCCA 59 377 38 Antisense
GAGATTACCGAGATCCGTGTTGGGG 366 389 130 Antisense
TCGACACGTTCGAATCCTACGCAAG 662 597 164 Antisense
ATCCTACGCAAGATTCGCCATGAAA 24 39 177 Antisense
GCAGACCGAAGCCTCAATGAATCAC 265 313 273 Antisense
TACGGCAATGCTACATCACGCTCCG 520 647 302 Antisense
TCTGCCAGCTCTACTACAAATTCTA 441 609 332 Antisense
AGCTGAAAATTCCCGAACACGCGTG 361 77 371 Antisense
ACACGCGTGGAATGTGCCACTCGTC 6 109 387 Antisense
GGTCCTGGACCATGCAATTTATAAG 126 503 435 Antisense
Sequence Source Affymetrix Proprietary Database