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[187544_at]

Description K07E3.7 /REP_DB=WormBase Gene ID /WP=CE21026 /TR=SW:Q21286 /GB=AAC69102.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 42      6grp_total > 38      4grp_total > 54      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 257.4
(3)
P 		170.1
(-0.1)
A 		216.8
(1.5)
P 		91.1
(-3)
P 		166
B 226
(3)
P 		193
(1.2)
A 		115.9
(-3)
P 		203.1
(1.8)
P 		110
C 228.5
(3)
P 		199.9
(-0.2)
P 		224.6
(2.6)
P 		174.2
(-3)
P 		54
avr 237.3
(3) 		187.7
(-0.7) 		185.8
(-0.8) 		156.1
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 149.9
(0.6)
A 		187.3
(3)
P 		114.1
(-1.7)
A 		93.7
(-3)
M 		159.5
(1.2)
P 		176.7
(2.3)
P 		94
B 152.7
(2.8)
P 		155.5
(2.9)
P 		58.4
(-3)
A 		91.8
(-1)
A 		104.6
(-0.2)
P 		156.7
(3)
P 		98
C 152
(-0.1)
P 		181.7
(3)
P 		148.9
(-0.4)
A 		124.5
(-3)
M 		146.6
(-0.7)
P 		158.7
(0.6)
P 		57
avr 151.5
(1) 		174.8
(3) 		107.1
(-2.7) 		103.3
(-3) 		136.9
(-0.2) 		164
(2.1) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 93.7
(3)
P 		36.9
(-1.2)
A 		56.7
(0.2)
P 		13.3
(-3)
P 		80
B 72.1
(3)
P 		47.7
(-0.2)
A 		26.9
(-3)
P 		43.3
(-0.8)
P 		45
C 75.6
(2.7)
P 		57.5
(0.4)
P 		78.3
(3)
P 		29.4
(-3)
P 		49
avr 80.5
(3) 		47.4
(-0.8) 		54
(-0.1) 		28.7
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 27.6
(-2.5)
A 		66.6
(3)
P 		24.8
(-2.9)
A 		23.8
(-3)
M 		48.1
(0.4)
P 		43
(-0.3)
P 		43
B 53.1
(2.3)
P 		51.8
(2.1)
P 		14.2
(-3)
A 		24.3
(-1.6)
A 		42.5
(0.8)
P 		58.4
(3)
P 		44
C 56.3
(3)
P 		55.4
(2.8)
P 		37.9
(-0.5)
A 		25
(-3)
M 		47.5
(1.3)
P 		53.1
(2.4)
P 		31
avr 45.7
(0.8) 		57.9
(3) 		25.6
(-2.8) 		24.4
(-3) 		46
(0.9) 		51.5
(1.9) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16428
Sequence Type Exemplar sequence
Representative Public ID K07E3.7 NCBI
Target Description K07E3.7 /REP_DB=WormBase Gene ID /WP=CE21026 /TR=SW:Q21286 /GB=AAC69102.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029596(11), NM_001029597(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029596 NCBI Caenorhabditis elegans K07E3.7a (K07E3.7) mRNA, complete cds. 11/11 None
NM_001029597 NCBI Caenorhabditis elegans K07E3.7b (K07E3.7) mRNA, complete cds. 11/11 None
SNAP00000041516 ENSEMBL cdna:SNAP chromosome:CEL140:X:8090315:8093100:-1 11/11 None
GENEFINDER00000041523 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8090315:8102419:-1 11/11 None
K07E3.7a.1 ENSEMBL cdna:known chromosome:CEL140:X:8089766:8096372:-1 gene:K07E3.7 11/11 None
K07E3.7a.3 ENSEMBL cdna:known chromosome:CEL140:X:8089776:8098714:-1 gene:K07E3.7 11/11 None
K07E3.7a.2 ENSEMBL cdna:known chromosome:CEL140:X:8089776:8098803:-1 gene:K07E3.7 11/11 None
K07E3.7b ENSEMBL cdna:known chromosome:CEL140:X:8090315:8098655:-1 gene:K07E3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8091268-8096647(-) 99.94 99.94
Public Domain and Genome References
Ensembl K07E3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05561 Hypothetical protein K07E3.7b [Caenorhabditis elegans] ref|NP_001024768.1| K07E3.7b [Caenorhabditis elegans] sp|Q21286|YBF7_CAEEL Probable cation-transporting ATPase K07E3.7 in chromosome X 0.0
blast AAU05560 Hypothetical protein K07E3.7a [Caenorhabditis elegans] ref|NP_001024767.1| K07E3.7a [Caenorhabditis elegans] 0.0
blast CAE70350 Hypothetical protein CBG16898 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A1A3_HUMAN (P13637) Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9) (Sodium pump 3) (Na+/K+ ATPase 3) (Alpha(III)) 1.0E-121
ec A1A2_HUMAN (P50993) Sodium/potassium-transporting ATPase alpha-2 chain precursor (EC 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) 0.0
ec A1A1_HUMAN (P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 7.4E-9
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 7.8E-5
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 7.4E-9
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 7.8E-5
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 7.4E-9
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 2.1E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024767.1 11 40-59,178-200,215-234,388-410,425-447,907-929,939-956,977-999,1014-1036,1048-1070,1090-1112
NP_001024768.1 11 69-88,207-229,244-263,417-439,454-476,936-958,968-985,1006-1028,1043-1065,1077-1099,1119-1141
K07E3.7a.1 11 40-59,178-200,215-234,388-410,425-447,907-929,939-956,977-999,1014-1036,1048-1070,1090-1112
K07E3.7a.3 11 40-59,178-200,215-234,388-410,425-447,907-929,939-956,977-999,1014-1036,1048-1070,1090-1112
K07E3.7a.2 11 40-59,178-200,215-234,388-410,425-447,907-929,939-956,977-999,1014-1036,1048-1070,1090-1112
K07E3.7b 11 69-88,207-229,244-263,417-439,454-476,936-958,968-985,1006-1028,1043-1065,1077-1099,1119-1141
SNAP00000041516 5 326-348,369-391,406-428,440-462,482-504
GENEFINDER00000041523 12 7-29,115-134,253-275,290-309,463-485,500-522,920-942,952-969,990-1012,1027-1049,1061-1083,1103-1125
Sequence
Target Sequence 
>C. ELEGANS:187544_AT
aacgagtttttgtctgtcatgctattatataatgatggaacaaatatttcggacggccag
ttcttgtacatcgatcttgttttaatcactcttgttgcattgtttttgggaaacacagaa
gcatcgagaaagcttagtggaattccgccacctcgcagactggccaccagtgctttttat
ttcagtgttttcggacaaatgtttttcaatattattactcagacgaccggatatcttctc
gtacgtggccaatcctggtacgttccgaatccggaagaattggacaacacaactaccatg
attggaactactgtcttcttcaccagttgctgtatgtatcttggttatgcttttgtctac
tctaaaggtcatccttatcgtcgttctgtgttcactaactggcttctttgtggaatcatt
tttgttattggcgccatcaacatggtgatgatcttcacaaacatgggattccttatgaac
ttgatgggattcgtttacgttccaagtacatcgatgcgctttattctcctcgcaatttca
ctggctggagttttcctgtctttgctctacgaacatttcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGAGTTTTTGTCTGTCATGCTAT 5 145 2854 Antisense
ATATTTCGGACGGCCAGTTCTTGTA 195 17 2897 Antisense
AAGCTTAGTGGAATTCCGCCACCTC 333 149 2983 Antisense
ACTGGCCACCAGTGCTTTTTATTTC 87 89 3012 Antisense
GACGACCGGATATCTTCTCGTACGT 411 379 3075 Antisense
GATTGGAACTACTGTCTTCTTCACC 673 435 3153 Antisense
CTTGGTTATGCTTTTGTCTACTCTA 514 217 3193 Antisense
TTATCGTCGTTCTGTGTTCACTAAC 660 677 3228 Antisense
AGTACATCGATGCGCTTTATTCTCC 112 63 3358 Antisense
TCACTGGCTGGAGTTTTCCTGTCTT 598 625 3391 Antisense
GTCTTTGCTCTACGAACATTTCTTC 564 469 3411 Antisense
Sequence Source Affymetrix Proprietary Database