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[187543_s_at]

Description T17E9.2 /REP_DB=WormBase Gene ID /WP=CE01406 /TR=SW:P46548 /GB=AAA19436.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 11      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 56      6grp_total > 23      4grp_total > 58      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3365
1 2 3 4 range
A 2684.5
(-0.3)
P 		4481.9
(3)
P 		3829.6
(1.8)
P 		1169
(-3)
P 		3313
B 2769.9
(-0)
P 		3828.1
(1.9)
P 		4443.9
(3)
P 		1132.3
(-3)
P 		3312
C 2248.4
(-0.6)
P 		4000.3
(3)
P 		3709.7
(2.4)
P 		1117
(-3)
P 		2883
avr 2567.6
(-0.1) 		4103.4
(3) 		3994.4
(2.8) 		1139.4
(-3) 		2964

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1165
1 2 3 4 5 6 range
A 2597.9
(3)
P 		2089.2
(-1.6)
P 		2026.9
(-2.2)
P 		1977.5
(-2.6)
P 		1934
(-3)
P 		2289.6
(0.2)
P 		664
B 2295.9
(1.9)
P 		2368.7
(3)
P 		2091.8
(-1.1)
P 		2207.4
(0.6)
P 		1994.9
(-2.6)
P 		1965
(-3)
P 		404
C 1977.8
(0.2)
P 		2241.3
(1.8)
P 		2443.8
(3)
P 		2168.5
(1.4)
P 		1909.8
(-0.2)
P 		1432.5
(-3)
P 		1011
avr 2290.5
(3) 		2233.1
(2.1) 		2187.5
(1.4) 		2117.8
(0.4) 		1946.2
(-2.2) 		1895.7
(-3) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1122
1 2 3 4 range
A 977.4
(2.8)
P 		972.9
(2.8)
P 		1001.1
(3)
P 		171.1
(-3)
P 		830
B 883.3
(1.9)
P 		945.5
(2.4)
P 		1029.8
(3)
P 		241.3
(-3)
P 		789
C 744.3
(0)
P 		1150.1
(2.2)
P 		1292.9
(3)
P 		188.3
(-3)
P 		1105
avr 868.3
(1.4) 		1022.8
(2.4) 		1107.9
(3) 		200.2
(-3) 		908

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 478.9
(-2.3)
P 		743
(3)
P 		441.4
(-3)
P 		501.5
(-1.8)
P 		583.6
(-0.2)
P 		557.4
(-0.7)
P 		302
B 798.8
(2.8)
P 		788.5
(2.6)
P 		508
(-3)
P 		584.7
(-1.5)
P 		810.5
(3)
P 		732.7
(1.5)
P 		303
C 733.1
(3)
P 		683.9
(2)
P 		622
(0.8)
P 		436.1
(-3)
P 		618
(0.7)
P 		479.6
(-2.1)
P 		297
avr 670.3
(1.2) 		738.5
(3) 		523.8
(-2.6) 		507.4
(-3) 		670.7
(1.2) 		589.9
(-0.9) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187543_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6143
Sequence Type Exemplar sequence
Representative Public ID T17E9.2 NCBI
Target Description T17E9.2 /REP_DB=WormBase Gene ID /WP=CE01406 /TR=SW:P46548 /GB=AAA19436.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065924(11), NM_065925(11), NM_171150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065924 NCBI Caenorhabditis elegans T17E9.2b (T17E9.2) mRNA, complete cds. 11/11 None
NM_065925 NCBI Caenorhabditis elegans T17E9.2a (T17E9.2) mRNA, complete cds. 11/11 None
NM_171150 NCBI Caenorhabditis elegans T17E9.2c (T17E9.2) mRNA, complete cds. 11/11 None
SNAP00000026955 ENSEMBL cdna:SNAP chromosome:CEL140:III:6114722:6116255:-1 11/11 None
GENEFINDER00000026958 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6114722:6116255:-1 11/11 None
T17E9.2b ENSEMBL cdna:known chromosome:CEL140:III:6114422:6116268:-1 gene:T17E9.2 11/11 None
T17E9.2a ENSEMBL cdna:known chromosome:CEL140:III:6114722:6116271:-1 gene:T17E9.2 11/11 None
T17E9.2c ENSEMBL cdna:known chromosome:CEL140:III:6114722:6116267:-1 gene:T17E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6114720-6116254(-) 100.0 100.0
Public Domain and Genome References
Ensembl T17E9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK77637 Hypothetical protein T17E9.2b [Caenorhabditis elegans] ref|NP_498325.1| T17E9.2b [Caenorhabditis elegans] 0.0
blast AAA19436 Hypothetical protein T17E9.2a [Caenorhabditis elegans] ref|NP_498326.1| T17E9.2a [Caenorhabditis elegans] sp|P46548|NMT_CAEEL Probable glycylpeptide N-tetradecanoyltransferase (Peptide N-myristoyltransferase) (Myristoyl-CoA:protein N-myristoyltransferase) (NMT) 0.0
blast AAM97952 Hypothetical protein T17E9.2c [Caenorhabditis elegans] ref|NP_741171.1| T17E9.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000903 EMBL-EBI Myristoyl-CoA:protein N-myristoyltransferase 1.0E-126
Pfam IPR000903 EMBL-EBI Myristoyl-CoA:protein N-myristoyltransferase 1.0E-126
Pfam IPR000903 EMBL-EBI Myristoyl-CoA:protein N-myristoyltransferase 1.0E-126
Pfam IPR000903 EMBL-EBI Myristoyl-CoA:protein N-myristoyltransferase 1.0E-126
Pfam IPR000903 EMBL-EBI Myristoyl-CoA:protein N-myristoyltransferase 1.0E-126
Pfam IPR000903 EMBL-EBI Myristoyl-CoA:protein N-myristoyltransferase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187543_S_AT
accgatcgctcaatccacgaaagcttatcgacgttcgcttctcgcatttgtctgccaaaa
tgacaatggcgagaacaattaagctttacaagttgcctgaggagacggccacacgcaacc
ttcgcgagatgaaaagtaccgatgtaccacaggttttcaagttattgactacaagtctga
agcaatactcattggctccagtctacaatagcgaggaagaacttgctcatgcccttgttc
ctaaaaagggtgtcgtgtattcgtatgtagcagagaatcaaaacggtaagattaccgatt
tcgtctcgttctactctcttccatcaactgttatgggacacacgacccacaagaccatct
atgccgcttatctctactactacgttgctggatcagtgacccccaagcagctcatcaatg
attcccttattctagccaaccgtgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGATCGCTCAATCCACGAAAGCT 539 89 764 Antisense
GAAAGCTTATCGACGTTCGCTTCTC 594 359 782 Antisense
AAGTTGCCTGAGGAGACGGCCACAC 353 155 853 Antisense
CCACACGCAACCTTCGCGAGATGAA 478 275 872 Antisense
GCAATACTCATTGGCTCCAGTCTAC 320 323 945 Antisense
GCTCATGCCCTTGTTCCTAAAAAGG 243 299 988 Antisense
GGTGTCGTGTATTCGTATGTAGCAG 93 501 1012 Antisense
AGATTACCGATTTCGTCTCGTTCTA 251 65 1052 Antisense
TTATCTCTACTACTACGTTGCTGGA 208 681 1131 Antisense
AGCAGCTCATCAATGATTCCCTTAT 517 77 1169 Antisense
TCCCTTATTCTAGCCAACCGTGAAA 585 595 1186 Antisense
Sequence Source Affymetrix Proprietary Database