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[187541_at]

Description Y110A2AR.1 /REP_DB=WormBase Gene ID /WP=CE24116 /TR=Q9N488 /GB=AAF60410.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 53.1
(-3)
A 		114.3
(0.6)
A 		153.8
(3)
A 		151.2
(2.8)
M 		101
B 73.3
(-3)
A 		139.2
(3)
A 		108.2
(0.2)
A 		106
(-0)
M 		66
C 61.2
(-3)
A 		96.5
(2.6)
A 		88.6
(1.4)
A 		98.7
(3)
P 		38
avr 62.5
(-3) 		116.7
(2.8) 		116.9
(2.8) 		118.6
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 600
1 2 3 4 5 6 range
A 46.9
(-3)
A 		73.8
(-2.7)
A 		90.6
(-2.6)
P 		169.3
(-1.8)
P 		402.4
(0.6)
P 		647.2
(3)
P 		600
B 57.4
(-2.9)
A 		61.2
(-2.9)
A 		53.2
(-3)
A 		158.6
(-1.7)
P 		454.5
(1.9)
P 		547.7
(3)
P 		495
C 68.3
(-2.9)
A 		64
(-3)
A 		71.4
(-2.9)
A 		160.7
(-1.8)
P 		435.6
(1.4)
P 		566.9
(3)
P 		503
avr 57.5
(-3) 		66.3
(-2.9) 		71.7
(-2.8) 		162.9
(-1.8) 		430.8
(1.2) 		587.3
(3) 		530
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 19.3
(-3)
A 		24.8
(-1.4)
A 		40.2
(3)
A 		22.1
(-2.2)
M 		21
B 23.4
(-2.6)
A 		34.4
(3)
A 		25.1
(-1.7)
A 		22.6
(-3)
M 		12
C 20.2
(-1.5)
A 		27.7
(1.7)
A 		30.9
(3)
A 		16.6
(-3)
P 		14
avr 21
(-2.7) 		29
(1.4) 		32.1
(3) 		20.4
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 8.6
(-3)
A 		26.3
(-2.3)
A 		19.7
(-2.6)
P 		42.9
(-1.6)
P 		121.4
(1.5)
P 		157.6
(3)
P 		149
B 20
(-2.8)
A 		20.4
(-2.8)
A 		12.9
(-3)
A 		42
(-2.1)
P 		184.7
(2.4)
P 		204.3
(3)
P 		191
C 25.3
(-2.8)
A 		19.5
(-3)
A 		18.2
(-3)
A 		32.3
(-2.5)
P 		140.9
(1.3)
P 		189.8
(3)
P 		172
avr 18
(-3) 		22.1
(-2.8) 		16.9
(-3) 		39.1
(-2.2) 		149
(1.7) 		183.9
(3) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187541_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4534
Sequence Type Exemplar sequence
Representative Public ID Y110A2AR.1 NCBI
Target Description Y110A2AR.1 /REP_DB=WormBase Gene ID /WP=CE24116 /TR=Q9N488 /GB=AAF60410.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061998(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061998 NCBI Caenorhabditis elegans Y110A2AR.1 (Y110A2AR.1) mRNA, complete cds. 11/11 None
Y110A2AR.1 ENSEMBL cdna:known chromosome:CEL140:II:2919738:2920762:1 gene:Y110A2AR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2919775-2920643(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A2AR.1
Entrez Gene 173639 Entrez gene
SwissProt Q9N488 EMBL-EBI
WormBase CE24116 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60410 Hypothetical protein Y110A2AR.1 [Caenorhabditis elegans] ref|NP_494399.1| Y110A2AR.1 [Caenorhabditis elegans] 1.0E-106
blast CAE72450 Hypothetical protein CBG19620 [Caenorhabditis briggsae] 8.0E-64
blast NP_956352 hypothetical protein LOC337237 [Danio rerio] gb|AAH59545.1| Unknown (protein for MGC:73197) [Danio rerio] 5.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494399.1 3 7-25,40-62,67-89
Y110A2AR.1 3 7-25,40-62,67-89
Sequence
Target Sequence 
>C. ELEGANS:187541_AT
ctcattcctcattgtcgactggttcctgagcactttctacgtctcttgcttcattccgtt
ctacgatttcttcattctcacgttcacagtgctcatggcgattccccacattggattcgc
ctcggttctctacacaaagttcttggcgccgtttctgaggaaatacgagcgccgaatcga
caatatttccgcgaaattgatggataaagtgtgggagaacatgccgattgtggcgagcgc
ggtgccggcagttttggcgtcggtcgtcgcaacgcttaacagtgctccaactccaatttc
tcagcttgaaatcgaagaaatcgatagctcaatgagcctggacccggagccgcggcgccg
acccgcaactcgaaccccatctcgctcggagccaatcttcctcgatcagagcttcgaaat
ccaggatgacgaggatctgaacctcggcggcgacgacgtcttcatccgccagatcaagca
ggagatcgttgaggaggacctggaaatcgagaatcccgccgacgcgacgccaccgtcccc
gccgagaaggcgctcaacaatgcagacacgtcgtcagctcagatctgtgcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATTCCTCATTGTCGACTGGTTC 644 227 144 Antisense
GCTTCATTCCGTTCTACGATTTCTT 401 305 191 Antisense
TACGATTTCTTCATTCTCACGTTCA 110 649 205 Antisense
ACGTTCACAGTGCTCATGGCGATTC 104 95 223 Antisense
TTCTTGGCGCCGTTTCTGAGGAAAT 473 689 283 Antisense
ACATGCCGATTGTGGCGAGCGCGGT 517 105 362 Antisense
GCAACGCTTAACAGTGCTCCAACTC 439 319 412 Antisense
CTCCAACTCCAATTTCTCAGCTTGA 31 237 428 Antisense
CCAATCTTCCTCGATCAGAGCTTCG 282 277 535 Antisense
AAGGCGCTCAACAATGCAGACACGT 636 161 690 Antisense
GTCGTCAGCTCAGATCTGTGCAGCA 414 473 713 Antisense
Sequence Source Affymetrix Proprietary Database